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Publications

I will add a list of publications in the near future (below is an example), but in the mean time a list of publications, see UQ e-Space.

2021

AuthorsTitleVenueYearPDFAbstract
Rajapaksa, S. Sumanaweera, D. de la Banda, M. G. Stuckey, P. Abramson, D. Allison, L. Lesk, A. and Konagurthu, A. On identifying statistical redundancy at the level of amino acid subsequences 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), doi: 10.1109/BIBM52615.2021.9669282 2021 Abstract
Konagurthu Arun S., Subramanian Ramanan, Allison Lloyd, Abramson David, Stuckey Peter J., Garcia de la Banda Maria, Lesk Arthur M. Universal Architectural Concepts Underlying Protein Folding Patterns Frontiers in Molecular Biosciences, Vol 7, 2021, pp491, DOI: 10.3389/fmolb.2020.612920, ISSN:2296-889X 2021 Abstract
Parashar, M. and Abramson, D. Translational Computer science for Science and Engineering IEEE Computing in Science & Engineering, DOI 10.1109/MCSE.2021.3109962 2021 Abstract
Gulliver, R., Fahmi, M. and Abramson, D. Technical considerations when implementing digital infrastructure for social policy Aust J Soc Issues. 2021;56:269–287 2021 Abstract

2020

AuthorsTitleVenueYearPDFAbstract
Lesk, A.M., Konagurthu, A.S., Allison, L., de la Banda, M.G., Stuckey, P.J. and Abramson, D. Computer modelling of a potential agent against SARS‐Cov ‐2 (COVID ‐19) protease. Proteins. doi:10.1002/prot.25980 2020 Abstract
Abramson, D., Parashar, M., Arzberger, P. Translation computer science – Overview of the special issue Journal of Computational Science, 2020, 101227, ISSN 1877-7503, https://doi.org/10.1016/j.jocs.2020.101227. 2020 Abstract
Abramson D., Jin C., Luong J., Carroll J. A BeeGFS-Based Caching File System for Data-Intensive Parallel Computing Supercomputing Frontiers. SCFA 2020. Lecture Notes in Computer Science, vol 12082. Springer, Cham. 2020 Abstract
Dinh, M., Trung, C. and Abramson. Tracking scientific simulation using online time-series modelling The 20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing, May 11-14, 2020, Melbourne, Victoria, Australia. 2020 Abstract

2019

AuthorsTitleVenueYearPDFAbstract
Endrei, M., Jin, C., Dinh, M. N., Abramson, D., Poxon, H., DeRose, L., & de Supinski, B. R. Statistical and machine learning models for optimizing energy in parallel applications. The International Journal of High Performance Computing Applications, 33(6), 1079–1097. https://doi.org/10.1177/1094342019842915. 2019 Abstract
Abramson, D. and Parashar, M. Translational Research in Computer Science Computer, vol. 52, no. 9, pp. 16-23, Sept. 2019, doi: 10.1109/MC.2019.2925650 2019 Abstract
Abramson, D., Carroll, J., Jin, C., Mallon, M., van Iperen, Z., Nguyen, H., McRae, A. and Ming, L. A Cache-based Data Movement Infrastructure for On-demand Scientific Cloud Computing Supercomputing Asia 2019, March 11-14th, 2019, Singapore. 2019 Abstract

2018

AuthorsTitleVenueYearPDFAbstract
Endrei, M., Jin, C., Dinh, M., Abramson, D., Poxon, H. DeRose. L., and De Supinski, B. Energy Efficiency Modeling of Parallel Applications IEEE Supercomputing SC18, Dallas Texas, November 2018. https://doi.org/10.1109/SC.2018.00020 2018 Abstract

2017

AuthorsTitleVenueYearPDFAbstract
Chao, J., de Supinski, B., Abramson, D., Poxon, H., De Rose, L., Dinh, M., Endrei, M., Jessup, E. A survey on software methods to improve the energy efficiency of parallel computing in the application layer International Journal of High Performance Computing Application, Vol 31, Issue 6, 2017, pp 517-549, doi:10.1177/1094342016665471. 2017 Abstract
Subramanian, R., Allison, L., Stuckey, P. J., Garcia de la Banda, M., Abramson, D., Lesk, A. M., and Konagurthu, A. Statistical compression of protein folding patterns and inference of recurrent sub-structural themes Data Compression Conference (DCC’2017), Salt Lake City, Utah, 4 – 7 April, 2017. 2017 Abstract
Nguyen, H., van Iperen, Z., Raghunath, S., Abramson, D., Kipouros, T. and Somasekharan, S. Multi-objective optimisation in scientific workflow 2017 International Conference on Computational Science, Zurich, 12-14 June, 2017. 2017 Abstract
Nguyen, H., Bland, L., Roberts, T., Guru, S., Dinh, M and Abramson, D. A computational pipeline for the IUCN risk assessment for Meso-American reef ecosystem 13th IEEE eScience Conference, Auckland, New Zealand 24th – 27th October, 2017. 2017 Abstract
Abramson, D., Carroll, J., Jin, C. and Mallon, M. A Metropolitan Area Infrastructure for Data Intensive Science 13th IEEE eScience Conference, Auckland, New Zealand 24th – 27th October, 2017. 2017 Abstract
Endrei, M., Jin, C., Dinh, M., Abramson, D., Poxon, H. DeRose. L., and De Supinski A Bottleneck-centric Tuning Policy for Optimizing Energy in Parallel Programs 2017 International Conference on Parallel Computing (ParCo), Bologna, Italy 12-15, September 2017. https://doi.org/10.3233/978-1-61499-843-3-265 2017 Abstract

2016

AuthorsTitleVenueYearPDFAbstract
Dinh, M., Abramson, D. and Chao, J. Runtime verification of large scientific codes using statistics ICCS 2016, June 2016, San Diego. 2016 Abstract
Dinh, M., Chao, J., Abramson, D. and Jeffery, C. Runtime Verification of Scientific Computing: Towards an Extreme Scale 5th Workshop on Extreme-Scale Programming Tools (ESPT), Held in conjunction with SC16, Salt Lake City, 13th November, 2016. 2016 Abstract
Nguyen, H., Abramson, D., Guru, S., Sun, Y. CoESRA: From virtual desktop to science gateway Gateways 2016, November 2 – 3, San Diego, 2016. 2016 Abstract


2015

AuthorsTitleVenueYearPDFAbstract
Quenette, S and Xi, Y and Mansour, J, Moresi, L and Abramson, D. Underworld-GT applied to Guangdong, a tool to explore the geothermal potential of the crust Journal of Earth Science, Vol 26, No 1, pp 78 – 88, Feb 2015, doi 10.1007/s12583-015-0517-z. 2015 Abstract
Nguyen, H., Abramson, D, Kipouros, T, Janke, A and Galloway, G. WorkWays: Interacting with Scientific Workflows Concurrency Computation: Practice and Experience, 27: 4377–4397, 21 May 2015, doi: 10.1002/cpe.3525. 2015 Abstract
Beringer, J., Hutley, L. B., Abramson, D., Arndt, S. K., Briggs, P., Bristow, M., Canadell, J. G., Cernusak, L. A., Eamus, D., Edwards, A. C., Evans, B. J., Fest, B., Goergen, K., Grover, S. P., Hacker, J., Haverd, V., Kanniah, K., Livesley, S. J., Lynch, A., Maier, S., Moore, C., Raupach, M., Russell-Smith, J., Scheiter, S., Tapper, N. J. and Uotila, P. Fire in Australian savannas: from leaf to landscape. Glob Change Biol, 21: 62–81. doi:10.1111/gcb.12686. 2015 Abstract
Abramson, D., Krzhizhanovskaya, V., Lees, M. Perspectives of the International Conference of Computational Science 2014 Journal of Computational Science, Volume 10, September 2015, Pages 247-248, ISSN 1877-7503, http://dx.doi.org/10.1016/j.jocs.2015.08.007. 2015 Abstract
Abramson, D. FlashLite: A High Performance Machine for Data Intensive Science 21st IEEE International Conference on Parallel and Distributed Systems (ICPADS 2015), Melbourne, Australia, December 14 – 17, 2015. 2015 Abstract
Abramson, D., Dinh, N, Chao, J., DeRose, L., Gontarek, A., Vose, A. and., Moench, B. Relative debugging for a highly parallel hybrid computer system IEEE Supercomputing 2015, Austin Texas, 16th – 20th November, 2015 2015 Abstract
Guru, S. M., Dwyer, R. G., Watts, M. E., Dinh, M. N., Abramson, D., Nguyen, H. A., Campbell, H. A., Franklin, C. E., Clancy, T. and Possingham H. P. A Reusable Scientific workflow for conservation Planning MODSIM 2015, 29th Nov – 4th Dec 2015, Gold Coast, Australia. 2015 Abstract