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Publications

I will add a list of publications in the near future (below is an example), but in the mean time a list of publications, see UQ e-Space.

2026

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2025

AuthorsTitleVenueYearPDFAbstract

2024

AuthorsTitleVenueYearPDFAbstract

2023

AuthorsTitleVenueYearPDFAbstract

2022

AuthorsTitleVenueYearPDFAbstract

2021

AuthorsTitleVenueYearPDFAbstract
Rajapaksa, S. Sumanaweera, D. de la Banda, M. G. Stuckey, P. Abramson, D. Allison, L. Lesk, A. and Konagurthu, A. On identifying statistical redundancy at the level of amino acid subsequences 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), doi: 10.1109/BIBM52615.2021.9669282 2021 Abstract
Konagurthu Arun S., Subramanian Ramanan, Allison Lloyd, Abramson David, Stuckey Peter J., Garcia de la Banda Maria, Lesk Arthur M. Universal Architectural Concepts Underlying Protein Folding Patterns Frontiers in Molecular Biosciences, Vol 7, 2021, pp491, DOI: 10.3389/fmolb.2020.612920, ISSN:2296-889X 2021 Abstract
Parashar, M. and Abramson, D. Translational Computer science for Science and Engineering IEEE Computing in Science & Engineering, DOI 10.1109/MCSE.2021.3109962 2021 Abstract
Gulliver, R., Fahmi, M. and Abramson, D. Technical considerations when implementing digital infrastructure for social policy Aust J Soc Issues. 2021;56:269–287 2021 Abstract

2020

AuthorsTitleVenueYearPDFAbstract
Lesk, A.M., Konagurthu, A.S., Allison, L., de la Banda, M.G., Stuckey, P.J. and Abramson, D. Computer modelling of a potential agent against SARS‐Cov ‐2 (COVID ‐19) protease. Proteins. doi:10.1002/prot.25980 2020 Abstract
Abramson, D., Parashar, M., Arzberger, P. Translation computer science – Overview of the special issue Journal of Computational Science, 2020, 101227, ISSN 1877-7503, https://doi.org/10.1016/j.jocs.2020.101227. 2020 Abstract
Abramson D., Jin C., Luong J., Carroll J. A BeeGFS-Based Caching File System for Data-Intensive Parallel Computing Supercomputing Frontiers. SCFA 2020. Lecture Notes in Computer Science, vol 12082. Springer, Cham. 2020 Abstract
Dinh, M., Trung, C. and Abramson. Tracking scientific simulation using online time-series modelling The 20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing, May 11-14, 2020, Melbourne, Victoria, Australia. 2020 Abstract

2019

AuthorsTitleVenueYearPDFAbstract
Endrei, M., Jin, C., Dinh, M. N., Abramson, D., Poxon, H., DeRose, L., & de Supinski, B. R. Statistical and machine learning models for optimizing energy in parallel applications. The International Journal of High Performance Computing Applications, 33(6), 1079–1097. https://doi.org/10.1177/1094342019842915. 2019 Abstract
Abramson, D. and Parashar, M. Translational Research in Computer Science Computer, vol. 52, no. 9, pp. 16-23, Sept. 2019, doi: 10.1109/MC.2019.2925650 2019 Abstract
Abramson, D., Carroll, J., Jin, C., Mallon, M., van Iperen, Z., Nguyen, H., McRae, A. and Ming, L. A Cache-based Data Movement Infrastructure for On-demand Scientific Cloud Computing Supercomputing Asia 2019, March 11-14th, 2019, Singapore. 2019 Abstract

2018

AuthorsTitleVenueYearPDFAbstract
Endrei, M., Jin, C., Dinh, M., Abramson, D., Poxon, H. DeRose. L., and De Supinski, B. Energy Efficiency Modeling of Parallel Applications IEEE Supercomputing SC18, Dallas Texas, November 2018. https://doi.org/10.1109/SC.2018.00020 2018 Abstract

2017

AuthorsTitleVenueYearPDFAbstract
Chao, J., de Supinski, B., Abramson, D., Poxon, H., De Rose, L., Dinh, M., Endrei, M., Jessup, E. A survey on software methods to improve the energy efficiency of parallel computing in the application layer International Journal of High Performance Computing Application, Vol 31, Issue 6, 2017, pp 517-549, doi:10.1177/1094342016665471. 2017 Abstract
Subramanian, R., Allison, L., Stuckey, P. J., Garcia de la Banda, M., Abramson, D., Lesk, A. M., and Konagurthu, A. Statistical compression of protein folding patterns and inference of recurrent sub-structural themes Data Compression Conference (DCC’2017), Salt Lake City, Utah, 4 – 7 April, 2017. 2017 Abstract
Nguyen, H., van Iperen, Z., Raghunath, S., Abramson, D., Kipouros, T. and Somasekharan, S. Multi-objective optimisation in scientific workflow 2017 International Conference on Computational Science, Zurich, 12-14 June, 2017. 2017 Abstract
Nguyen, H., Bland, L., Roberts, T., Guru, S., Dinh, M and Abramson, D. A computational pipeline for the IUCN risk assessment for Meso-American reef ecosystem 13th IEEE eScience Conference, Auckland, New Zealand 24th – 27th October, 2017. 2017 Abstract
Abramson, D., Carroll, J., Jin, C. and Mallon, M. A Metropolitan Area Infrastructure for Data Intensive Science 13th IEEE eScience Conference, Auckland, New Zealand 24th – 27th October, 2017. 2017 Abstract
Endrei, M., Jin, C., Dinh, M., Abramson, D., Poxon, H. DeRose. L., and De Supinski A Bottleneck-centric Tuning Policy for Optimizing Energy in Parallel Programs 2017 International Conference on Parallel Computing (ParCo), Bologna, Italy 12-15, September 2017. https://doi.org/10.3233/978-1-61499-843-3-265 2017 Abstract

2016

AuthorsTitleVenueYearPDFAbstract
Dinh, M., Abramson, D. and Chao, J. Runtime verification of large scientific codes using statistics ICCS 2016, June 2016, San Diego. 2016 Abstract
Dinh, M., Chao, J., Abramson, D. and Jeffery, C. Runtime Verification of Scientific Computing: Towards an Extreme Scale 5th Workshop on Extreme-Scale Programming Tools (ESPT), Held in conjunction with SC16, Salt Lake City, 13th November, 2016. 2016 Abstract
Nguyen, H., Abramson, D., Guru, S., Sun, Y. CoESRA: From virtual desktop to science gateway Gateways 2016, November 2 – 3, San Diego, 2016. 2016 Abstract


2015

AuthorsTitleVenueYearPDFAbstract
Quenette, S and Xi, Y and Mansour, J, Moresi, L and Abramson, D. Underworld-GT applied to Guangdong, a tool to explore the geothermal potential of the crust Journal of Earth Science, Vol 26, No 1, pp 78 – 88, Feb 2015, doi 10.1007/s12583-015-0517-z. 2015 Abstract
Nguyen, H., Abramson, D, Kipouros, T, Janke, A and Galloway, G. WorkWays: Interacting with Scientific Workflows Concurrency Computation: Practice and Experience, 27: 4377–4397, 21 May 2015, doi: 10.1002/cpe.3525. 2015 Abstract
Beringer, J., Hutley, L. B., Abramson, D., Arndt, S. K., Briggs, P., Bristow, M., Canadell, J. G., Cernusak, L. A., Eamus, D., Edwards, A. C., Evans, B. J., Fest, B., Goergen, K., Grover, S. P., Hacker, J., Haverd, V., Kanniah, K., Livesley, S. J., Lynch, A., Maier, S., Moore, C., Raupach, M., Russell-Smith, J., Scheiter, S., Tapper, N. J. and Uotila, P. Fire in Australian savannas: from leaf to landscape. Glob Change Biol, 21: 62–81. doi:10.1111/gcb.12686. 2015 Abstract
Abramson, D., Krzhizhanovskaya, V., Lees, M. Perspectives of the International Conference of Computational Science 2014 Journal of Computational Science, Volume 10, September 2015, Pages 247-248, ISSN 1877-7503, http://dx.doi.org/10.1016/j.jocs.2015.08.007. 2015 Abstract
Abramson, D. FlashLite: A High Performance Machine for Data Intensive Science 21st IEEE International Conference on Parallel and Distributed Systems (ICPADS 2015), Melbourne, Australia, December 14 – 17, 2015. 2015 Abstract
Abramson, D., Dinh, N, Chao, J., DeRose, L., Gontarek, A., Vose, A. and., Moench, B. Relative debugging for a highly parallel hybrid computer system IEEE Supercomputing 2015, Austin Texas, 16th – 20th November, 2015 2015 Abstract
Guru, S. M., Dwyer, R. G., Watts, M. E., Dinh, M. N., Abramson, D., Nguyen, H. A., Campbell, H. A., Franklin, C. E., Clancy, T. and Possingham H. P. A Reusable Scientific workflow for conservation Planning MODSIM 2015, 29th Nov – 4th Dec 2015, Gold Coast, Australia. 2015 Abstract

2014

AuthorsTitleVenueYearPDFAbstract
Simonov, A., Grosse, W., Mashkina, M., Bethwaite, B., Tan, J., Abramson, D., Wallace, G., Moulton, S., Bond, A. New insights into the analysis of the electrode kinetics of flavin adenine dinucleotide redox centre of glucose oxidase immobilized on carbon electrodes Langmuir, Feb 2014. DOI: 10.1021/la404872p. 2014 Abstract
Konagurthu, A. S., Allison, L., Abramson, D. , Stuckey, P. J. and Lesk, M. How precise are reported protein coordinate data? Acta Cryst. (2014). D70, 904-906, doi:10.1107/S1399004713031787. 2014 Abstract
Dinh, M., Abramson, D., Chao, J. Statistical assertion: a more powerful method for debugging scientific applications Journal of Computational Science, Volume 5, issue 2, 126-134, March 2014. 2014 Abstract
Vail, M., Tan, A., Murone, C., Abebe, D., Lee, F-T., Baer, M., Palath, V., Bebbington, C., Yarranton, G., Llerena, C., Garic, S., Abramson, D., Cartwright, G., Scott, A. and Lackmann, M. Targeting EphA3 inhibits cancer growth by disrupting the tumor stromal microenvironment Cancer Res. 2014 Aug 15;74(16):4470-81. doi: 10.1158/0008-5472.CAN-14-0218. 2014 Abstract
Nguyen, H., Abramson, D. and  Kipouros, T. The WorkWays problem solving environment ICCS 2014, Cairns, June 10-12, 2014. 2014 Abstract
Dinh, N, Abramson, D., Chao, J., Moench, B., Gontarek, A. and DeRose, L. Support comparative debugging for large-scale UPC programs ICCS 2014, Cairns, June 10-12, 2014. 2014 Abstract

2013

AuthorsTitleVenueYearPDFAbstract
Dinh, M., Abramson, D., Chao, J. Scalable relative debugging IEEE Transactions on Parallel and Distributed Systems, Volume 25, issue 3, 740-74, March 2013. 2013 Abstract
Płóciennik, M, Bartek, T., Owsiak, O., Altintas, I., Wang, J., Crawl, D., Abramson, D., Imbeaux, F., Guillerminet, B., Frauel, Y., Lopez-Caniego, M., Plasencia, I., Pych, W., Ciecielag, P., Approaches to Distributed Execution of Scientific Workflows in Kepler Fundamenta Informaticae, IOS Press, Volume 128, Number 3 / 2013, pp 281-302. 2013 Abstract
Dinh, M., Abramson, D., Chao, J., Gontarek, A., Moench, B. and DeRose, L. A data-centric framework for debugging highly parallel applications Software: Practice and Experience, Nov 2013. 2013 Abstract
Lo, Y.H., Peachey, T., Abramson, D., and Michailova, A. Sensitivity of rabbit ventricular action potential and Ca2+ dynamics to small variations in membrane currents and ion diffusion coefficients BioMed Research International, Volume 2013, Article ID 565431. 2013 Abstract
Pettit, C.J., Williams, S., Bishop, I.D., Aurambout, J., Russel, A.B.M., Michael, A., Sharma, S., Hunter, D., Chan, P., Enticott, C.M., Borda, A., Abramson, D.A. Building an ecoinformatics platform to support climate change adaptation in Victoria Future Generation Computer Systems, vol 29, issue 2, Elsevier Science, Amsterdam Netherlands, pp. 624-640. 2013 Abstract
Sher, A.A., Wang, K., Wathen, A., Maybank, P., Mirams, G., Abramson, D.A., Noble, D., Gavaghan, D.J. A local sensitivity analysis method for developing biological models with identifiable parameters: Application to cardiac ionic channel modeling Future Generation Computer Systems [P], vol 29, issue 2, Elsevier Science, Amsterdam Netherlands, pp. 591-598. 2013 Abstract
Smanchat, S., Indrawan, M., Ling, S., Enticott, C. and Abramson, D. Scheduling Parameter Sweep Workflow in the Grid Based on Resource Competition Future Generation Computer Systems 29 (2013) 1164–1183 2013 Abstract
Mashkina, E., Peachey, T., Lee, CY., Bond, A., Kennedy, G., Enticott, C., Abramson, D. and Elton, D. Estimation of electrode kinetic and uncompensated resistance parameters 3 and insights into their significance using Fourier transformed ac voltammetry and e-science software tools Journal of Electroanalytical Chemistry 690 (2013) 104–110. 2013 Abstract
Huynh, M., Jin, C., Bethwaite, B., Abramson, D., Papadopoulos, P. and Clementi, L. Improved Virtual Machine Cloud Provisioning Cloud Asia, 2013, 14-17th May 2013, Singapore. 2013 Abstract
Chao, J., Ding, L. and Abramson, D. Extending the Eclipse Parallel Tools Platform debugger with Scalable Parallel Debugging Library ICCS 2013, Barcelona, Spain, June 5 – 7, 2013. 2013 Abstract

2012

AuthorsTitleVenueYearPDFAbstract
Dinh, M., Abramson, D., Chao, J., Kurniawan, D., Gontarek, A., Moench, B. and DeRose, L. Scalable parallel debugging with statistical assertions in 17th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP) – Poster, New Orleans, LA, USA, pp. 311-312. 2012 Abstract
Chao, J, Abramson, D., Dinh, M., Kurniawan, D., Gontarek, A, Moench, B. and DeRose, L. A Scalable Parallel Debugging Library with Pluggable Communication Protocols CCGrid 2012, The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, May 13-16, 2012, Ottawa, Canada. 2012 Abstract
Killeen, N., Lohrey, J., Farrell, M., Liu, W., Garic, S., Abramson, D. and Nguyen, H. Integration of modern data management practice with scientific workflows 8th IEEE International Conference on e-Science, October 8-12, 2012, Chicago, IL, USA. 2012 Abstract
Nguyen, H and Abramson, D. WorkWays: Interactive Workflow-based Science Gateways 8th IEEE International Conference on e-Science, October 8-12, 2012, Chicago, IL, USA. 2012 Abstract
Chambers, J., Bethwaite, B., Diamond, N., Peachey, T., Abramson, D., Petrou, S. and Thomas, E. Parametric computation predicts a multiplicative interaction between synaptic strength parameters that controls properties of gamma oscillations Frontiers in Computational Neuroscience, Volume 6, Article 53, doi: 10.3389/fncom.2012.00053, July 2012. 2012 Abstract
Yu, H.L. , Tan, J. and Abramson, D. Solving Optimization Problems in Nimrod/OK using a Genetic Algorithm ICCS 2012, Omaha, Nebraska, June 3-6. 2012 Abstract
Dinh, M., Abramson, D., Chao, J., Kurniawan, D., Gontarek, D., Moench, B. and DeRose, L. Debugging Scientific Applications With Statistical Assertions in International Conference on Computational Science (ICCS), Omaha, Nebraska, USA. 2012 Abstract
Kipouros, T., Peachey, T., Abramson, D and Savill, M. Enhancing and Developing the Practical Optimisation Capabilities and Intelligence of Automatic Design Software 8th AIAA Multidisciplinary Design Optimization Specialist Conference, 23 – 26 April, Honolulu, Hawaii, AIAA-2012-1677. 2012 Abstract
Peachey, T.C., Riley, M. J. W., Abramson, D. and Stewart, J. A Simplex-like Search Method for Bi-objective Optimization EngOpt 2012 – International Conference on Engineering Optimization, Rio de Janeiro, Brazil, 1-5 July 2012. 2012 Abstract
Peachey, T.C., Diamond, N.T., Abramson, D. and Enticott, C.M. Computing Factorial Designs for Large Numbers of Factors with 2^m levels. 2012 Abstract
Peachey, T.C., Abramson, D., Lewis, A. Heuristics for Parallel Simulated Annealing by Speculation. 2012 Abstract

2011

AuthorsTitleVenueYearPDFAbstract
S. Smanchat, M. Indrawan, S. Ling, C. Enticott, D. Abramson, A Scheduler based on Resource Competition for Parameter Sweep Workflow, Proceedings of the International Conference on Computational Science, ICCS, 1-3 June 2011, pp. 176-185. 2011 Abstract
Dinh, M., Abramson, D., Kurniawan, D., Moench, B. and DeRose, L. Assertion based parallel debugging CCGrid, 2011, Newport Beach, CA, 24-26th May, 2011. 2011 Abstract
Abramson, D. A. Applications Development for the Computational Grid D.Sc. Thesis, Faculty of Science, Monash University. 2011 Abstract
Peachey, T., Mashkina, E., Lee, C., Enticott, C., Abramson, D., Bond, A., Elton, D., Gavaghan, D., Stevenson, G., Kennedy, G. Leveraging e-Science Infrastructure for Electrochemistry Research Phil. Trans. R. Soc. A, AHM 2011, 10.1098/rsta.2011.0146, Phil. Trans. R. Soc. A, 28 August 2011 vol. 369 no. 1949 pp 3336-3352. 2011 Abstract
Spencer, D., Zimmerman, A. and Abramson, D. Project Management in E-Science: Challenges and Opportunities Computer Supported Cooperative Work (CSCW), DOI: 10.1007/s10606-011-9140-4, June 2011, Springer 2011 Abstract
Spencer, D., Zimmerman, A. and Abramson, D. Project Management in E-Science: Challenges and Opportunities Computer Supported Cooperative Work (CSCW), DOI: 10.1007/s10606-011-9140-4, June 2011, Springer 2011 Abstract
Kurniawan, D. and Abramson, D. ISENGARD: an Infrastructure for Supporting e-Science and Grid Application Development Concurrency and Computation Practice and Experience, Volume 23, Issue 4, pp 390–414, 25 March 2011. 2011 Abstract
Abramson, D., Bethwaite, B., Enticott, C., Garic, S. and Peachey, T. Parameter Exploration in Science and Engineering using Many-Task Computing Special issue of IEEE Transactions on Parallel and Distributed Systems on Many-Task Computing, June 2011, Volume: 22 Issue: 6, 960 – 973. 2011 Abstract
Nguyen, H and Abramson, D. Bethwaite, B., Dinh, M., Enticott, C., Firth, S., Garic, S., Harper, I., Lackmann, M., Russel, A.B.M, Schek, S. and Vail, M. Integrating Scientific Workflows and Large Tiled Display Walls: Bridging the Visualization Divide Fourth International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2), co-located with 2011 International Conference on Parallel Processing (ICPP-2011), Taipei, Taiwan September 13-16, 2011. 2011 Abstract
Abramson, D., Arzberger, P., Wienhausen, G., Date, S., Lin, F-P., Nan, K. and Shimojo, S. Cyberinfrastructure Internship and its application to e-Science e-Science 2011, Stockholm, Dec 2011. 2011 Abstract

2010

AuthorsTitleVenueYearPDFAbstract
Arzberger, P., Wienhausen, G., Abramson, D., Date, S., Lin, F-P., Nan, K. and Shimojo, S. PRIME: an integrated and sustainable undergraduate international research program Advances in Engineering Education, American Society for Engineering Education, Summer 2010, Volume 2, Number 2. 2010 Abstract
Riley, M. J. W., Peachey, T., Abramson D., and Jenkins, K. W. Multi-objective engineering shape optimization using differential evolution interfaced to the Nimrod/O tool IOP Conference Series: Materials Science and Engineering, Volume 10, Article Number 012189. 2010 Abstract
Bethwaite, B., Abramson, D., Bohnert, F., Garic, S., Enticott, C., Peachey, T. Mixing the Grid and Clouds: High-throughput Science using the Nimrod Tool Family 2010 Abstract
Tan, J., Abramson, D. and Enticott, C. Firewall Traversal in the Grid Architecture 12th IEEE International Conference on High Performance Computing and Communications (HPCC-2010), Melbourne, Australia, September 1-3, 2010. 2010 Abstract
Pettit, C., Russel, A.B.M., Michael, A., Aurambout, J-P., Sharma, S., Williams S., Hunter, D Chan, P.C., Borda, A., Bishop, I., Abramson, D. Realising an eScience platform to support climate change adaptation in Victoria, IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010 Abstract
Nunez, S., Bethwaite, B., Brenes, J., Barrantesz, G., Castro, J., Malavassiz, E. and Abramson, D. NG-TEPHRA: A Massively Parallel, Nimrod/G-enabled Volcanic Simulation in the Grid and the Cloud IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010 Abstract
Sher, A., Wang, K., Wathen, A., Abramson, D. and Gavaghan., D. A Local Sensitivity Analysis Method for Developing Cardiac Models with Identifiable Parameters: Application to L-type Calcium Channels Regulation IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010 Abstract
Enticott, C., Peachey, T., Abramson, D., Gavaghan, D., Bond, A., Elton, D., Mashkina, E., Lee, C., Kennedy, G. Electrochemical Parameter Optimization using Scientific Workflows IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010 Abstract
Sher, A., Cooling, M., Bethwaite, B., Tan, J., Peachey, T., Enticott, C., Garic, S., Gavaghan, D., Noble, D., Abramson, A., and Crampin, E. A Global Sensitivity Tool For Cardiac Cell Model: Ionic Currents Balance and Hypertrophic IP3 Transients in Atrial and Ventricular Cell Models 32nd Annual International IEEE EMBS Conference of the IEEE Engineering in Medicine and Biology Society in Buenos Aires Sheraton Hotel, Buenos Aires, Argentina during August 31 – September 4, 2010. 2010 Abstract
Abramson, D., Dinh, M.N., Kurniawan, D., Moench, B. and DeRose, L. Data Centric HIghly Parallel Debugging 2010 International Symposium on High Performance Distributed Computing (HPDC 2010), Chicago, USA, June 2010 2010 Abstract
Russel, A.B.M., Abramson, D., Bethwaite, B., Dinh, M., Enticott, C., Firth, S., Garic, S., Harper, I., Lackmann, M., Schek, S. and Vail, M. An Abstract Virtual Instrument System for High Throughput Automatic Microscopy Procedia Computer Science, Volume 1, Issue 1, ICCS (International Conference on Computational Science) 2010, May 2010, Pages 545-554, ISSN 1877-0509, DOI: 10.1016/j.procs.2010.04.058. 2010 Abstract
Abramson,D., Bethwaite, B., Enticott, C., Garic,S., Peachey, T., Michailova,A., Amirriazi, S. Embedding optimization in computational science workflows Elsevier, Journal of Computational Science 1, 2010, pp 41-47 2010 Abstract
Schmidberger, J., Bate, M., Reboul, C., Androulakis, S., Phan, J., Whisstock, J., Goscinski, W., Abramson, D. and Buckle, A. MrGrid: A Portable Grid Based Molecular Replacement Pipeline PLoS ONE, April 2010, Volume 5, Issue 4. 2010 Abstract
Abramson, D., Bernabeu, M., Bethwaite, B., Burrage, K., Corrias, A., Enticott, C., Garic, S., Gavaghan, D., Peachey, T., Pitt-Francis, J., Pueyo, E., Rodriguez, B., Sher, A. and Tan, J. High Throughput Cardiac Science on the Grid Special issue of Transactions of the Royal Society. Phil. Trans. R. Soc. A 2010 368, 3907-3923. 2010 Abstract

2009

AuthorsTitleVenueYearPDFAbstract
Peachey, T. C., Abramson D., and Lewis A. Parallel line search Optimization: Structure and Applications, Springer Optimization and Its Applications , Vol. 32, Pearce, C.; Hunt, E.(Eds.), Chapter 20, pp 369 – 381, ISBN: 978-0-387-98095-9 2009 Abstract
Bernabeu, M. O., Corrias, A, Pitt-Francis, J, Rodriguez, B, Bethwaite, B, Enticott, C, Garic, S, Peachey, T, Tan, J, Abramson, D, and Gavaghan, D B. Grid computing simulations of ion channel block effects on the ECG using 3D anatomically-based models Computers and Cardiology, Park City, Utah, September 13-16, 2009. 2009 Abstract
Tan, J. and Abramson, D. Optimizing Tunneled Grid Connectivity across Firewalls . 7th Australasian Symposium on Grid Computing and e-Research (AUSGRID 2009), Vol. 99. W. Kelly and P. Roe, Eds, Wellington, NZ, Jan 20th – 23rd, 2009. 2009 Abstract
Schmidberger, J., Bethwaite, B., Enticott, C., Bate, M., Androulakis, S., Faux, N., Reboul, C., Phan, J., Whisstock, J., Garic, S., Goscinski, W., Abramson, D., and Buckle, A. High-throughput Protein Structure Determination Using Grid Computing IEEE Workshop on High Performance Computational Biology , May 25, 2009, Rome, Italy, co-located with IPDPS 2009. 2009 Abstract
Chan, P and Abramson, D. Persistence and Communication State Transfer in an Asynchronous Pipe Mechanism International Journal of Grid and High Performance Computing, Vol. 1, Issue 3, 2009, Pages: 18-36. 2009 Abstract
Abramson, D, Bethwaite, B, Dinh, M, Enticott, C, Firth, S, Garic, S, Harper, I, Lackmann, M, Nguyen, H, Ramdas, T, Russel, A.B.M, Schek, S and Vail, M. Virtual Microscopy and Analysis using Scientific Workflows IEEE e-Science 2009, Dec 9 – 11th, Oxford, UK. 2009 Abstract
Abramson, D., Bethwaite, B., Enticott, C., Garic, S., Peachey, T., Michailova, A., Amirriazi, S., Chitters, R. Robust Workflows for Science and Engineering . 2nd Workshop on Many-Task Computing on Grids and Supercomputers(MTAGS 2009), Portland, USA, 16 November 2009 2009 Abstract
Abramson D., Bethwaite B., Enticott C., Garic S., Peachey T. Parameter Space Exploration using Scientific Workflows ICCS 2009, Baton Rouge, Louisiana, May 2009 2009 Abstract
Tan, J., Abramson, D. and Enticott, C. A Virtual Connectivity Layer for Grids IEEE e-Science 2009, Dec 9 – 11th, Oxford, UK. 2009 Abstract
Smanchat, S., Indrawan, M., Ling S., Enticott, C. and Abramson, D. Scheduling Multiple Parameter Sweep Workflow Instances on the Grid IEEE e-Science 2009, Dec 9 – 11th, Oxford, UK. 2009 Abstract
Pettit, C.J., Bishop, I.D., Borda, A., Uotila, P., Sposito, V.J., Raybould, L. and Russel, A.B.M. An e-Science Approach to Climate Change Adaptation Spatial Sciences Institute Biennial International Conference (SSC 2009): Place & Purpose Symposia, Adelaide, South Australia, 2009. 2009 Abstract
Abramson, D.A.,Chu, C.,Kurniawan, D., Searle, A. Relative Debugging in an integrated development environment Software – Practice and Experience, 2009:pp 1157-1183; John Wiley&Sons Ltd. 2009 Abstract
Ramdas, T., Egan, G. K., Abramson, D. A., & Baldridge, K. K. ÄòERI Sorting for Emerging Processor Architectures Computer Physics Communications, Elsevier, 2009 2009 Abstract
Ho, T and Abramson, T. An Active Data Model High Performance & Large Scale Computing, W. Gentzsch, L. Grandinetti, G. Joubert (Editors), IOS Press, Amsterdam, The Netherlands, Advances in Parallel Computing, 2009. 2009 Abstract
Dimmock M. R., J. E. Gillam, T. E. Beveridge, J.M.C. Brown, R. A. Lewis and C.J. Hall A Pixelated Emission Detector for RadiOisotopes (PEDRO) Nuclear Instruments and Methods in Physics Research A, 612, 2009, pp. 133-137. 2009 <a title=" The Pixelated Emission Detector for RadiOisotopes (PEDRO) is a hybrid imager designed for the measurement of single photon emission from small animals. The proof-of-principle device currently under development consists of a Compton-camera situated behind a mechanical modulator. The combination of mechanical and electronic (hybrid) collimation should provide optimal detection characteristics over a broad spectral range (30 keV <= E_\gamma Abstract
Buyya, R. and Abramson, D. The Nimrod/G Grid Resource Broker for Economic-based Scheduling in Market-Oriented Grid and Utility Computing (Wiley Series on Parallel and Distributed Computing), Editors Rajkumar Buyya and Kris Bubendorfer, ISBN-13: 978-0470287682, November 2009. 2009 Abstract

2008

AuthorsTitleVenueYearPDFAbstract
Goscinski, W. and Abramson, D. An Infrastructure for the Deployment of e-Science Applications in 2008 Abstract
Chan, P. and Abramson, D. A Programming Framework for Incremental Data Distribution in Iterative Applications. In: Proc. of the 2008 IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA-2008). 10-12 December 2008. Sydney, Australia. pp 244 – 251, IEEE Press ISBN 978-0-7695-3471-8. 2008 Abstract
Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. On ERI Sorting for SIMD Execution of Large-Scale Hartree-Fock SCF Comp. Phys. Commun., doi:10.1016/j.cpc.2008.01.045, 2008. 2008 Abstract
Abramson, D. A., Enticott, C., Peachey,T. Parameter Estimation using Scientific workflows Poster for Fourth IEEE International Conference on eScience, Indianopolis, 7-12 December 2008 2008 Abstract
Ayyub, S., Abramson, D., Enticott, C., Garic, S., Tan, J. Fault-tolerant execution of large parameter sweep applications across multiple VOs with storage constraints Concurrency and Computation: Practice and Experience. Currently Online, 25/8/2008, 2008 Abstract
Kurniawan, D and Abramson, D. An IDE Framework for Grid Application Development Grid 2008, Sept 29th – Oct 1st, Tsukuba, Japan. 2008 Abstract
Bethwaite, B., Abramson, D., Buckle, A Grid Interoperability: An Experiment in Bridging Grid Islands PRAGMA Workshop at e-Science, 2008, 4th IEEE International Conference on e-Science, Indiana, Dec 8th – 12th, 2008 2008 Abstract
Sher, A., Abramson, D, Enticott, C, Garic, S, Gavaghan, D., Noble, D., Noble, P., Peachey, T. Incorporating local Ca2+ dynamics into single cell ventricular models using Nimrod/O ICCS 2008, Krakow, Poland, June 2008. 2008 Abstract
Amirriazi S., Chang S., Peachey T., Abramson D. and Michailova A. Biophysics 2008, Long Beach, California, February 2008. 2008 Abstract
Pettit, C.J. and Russel, A.B.M. A Spatial Decision Support System Framework For Climate Change Adaptation In Victoria XXI Congress of the International Society for Photogrammetry and Remote Sensing (ISPRS), Beijing, China, July 2008, pp 515-521. 2008 Abstract
Tan, J., Abramson, D. & Enticott,C. REMUS: A Rerouting and Multiplexing System for Grid Connectivity Across Firewalls Journal of Grid Computing, Springer Netherlands ISSN 1570-7873 (Print) 1572-9814 (Online),DOI 10.1007/s10723-008-9104-1, 28 June 2008 2008 Abstract
Abramson D, Enticott C, Altintas I. Nimrod/K: Towards Massively Parallel Dynamic Grid Workflows IEEE SuperComputing 2008, Austin, Texas November 2008 2008 Abstract
Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. Uniting extrinsic vectorization and shell structure for efficient SIMD evaluation of Electron Repulsion Integrals to appear, J. Chem. Phys. Vol 349/1-3 pp 147-157, doi:10.1016/j.chemphys.2008.02.038 2008 Abstract
Goscinski, W. and Abramson, D. Parallel Programming on a High Performance Application-runtime Concurrency and Computation: Practice and Experience. June 2008. doi:10.1002/cpe.1325 2008 Abstract
Ramdas, T., Egan, G. K., Abramson, D., & Baldridge, K. K. Run-time thread sorting to expose data-level parallelism In Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors. (pp. 55-60). 2008 Abstract
Peachey, T. C., Diamond, N. T., Abramson, D. A. Sudholt, W., Michailova, A. Amirriazi, S. Fractional Factorial Design for Parameter Sweep Experiments using Nimrod/E Journal of Scientific Programming, Volume 16, Numbers 2,3, 2008. 2008 Abstract

2007

AuthorsTitleVenueYearPDFAbstract
Ayyub, S., Abramson, D. A. GridRod – A dynamic runtime scheduler for grid workflows Proceedings of the 2007 International Conference on Supercomputing, 17 June 2007 to 21 June 2007, The Association for Computing Machinery, New York NY USA, pp. 43-52. 2007 Abstract
Faux N., Beitz A., Bate M., Amin A. A., Atkinson I., Enticott C., Mahmood K., Swift M., Treloar A., Abramson D., Whisstock J. C., and Buckle A. M. eResearch Solutions for High Throughput Structural Biology The 3rd IEEE International Conference on e-Science and Grid Computing, Bangalore, India, 10-13 December 2007, CS Press, pp 221-227. 2007 Abstract
Kurniawan, D., Abramson, D. A. An integrated grid development environment in Eclipse Proceedings of the Third IEEE International Conference on e-Science and Grid Computing, 10 December 2007 to 13 December 2007, IEEE Computer Society, Los Alamitos CA USA, pp. 491-498 2007 Abstract
Lynch, A. H., D. Abramson, K. J. Beringer, and P. Uotila Influence of savanna fire on Australian monsoon season precipitation and circulation as simulated using a distributed computing environment Geophys. Res. Lett., 34, L20801, doi:10.1029/2007GL030879. 2007 Abstract
Ho, T. and Abramson, D., Active Data: Supporting the Grid Data Life Cycle 7th IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2007, Brazil, pp 39 – 46 2007 Abstract
Chan, P. and Abramson, D. Persistence and Communication State Transfer in an Asynchronous Pipe Mechanism The 13th International Conference on Parallel and Distributed Systems (ICPADS 07), Hsinchu, Taiwan, December 5-7, 2007. 2007 Abstract
Chan, P. and Abramson, D. pi-spaces: Support for Decoupled Communication in Wide-Area Parallel Applications 6th International Conference on Grid and Cooperative Computing (GCC2007), Urumchi, Xinjiang, China, August 16-18, 2007 2007 Abstract
Chan, P. and Abramson, D. A Scalable and Efficient Prefix-Based Lookup Mechanism for Large-Scale Grids The 3rd IEEE International Conference on e-Science and Grid Computing, Bangalore, India, 10-13 December 2007 2007 Abstract
Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. Converting massive TLP to DLP: a special-purpose processor for molecular orbital computations ACM International Conference on Computing Frontiers 2007, pp. 267-276, Ischia Italy, May 7 – 9 2007 2007 Abstract
Ayyub, S., Abramson, D., Enticott, C., Garic, S., Tan, J. Executing Large Parameter Sweep Applications on a Multi-VO Testbed 7th IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2007,Brazil, pp 73 – 80 2007 Abstract
Zheng C, Katz M, Papadopoulos P, Abramson D, Ayyub S, Enticott C, Garic S, Goscinski W, Arzberger P, Lee B S, Phatanapherom S, Sriprayoonsakul S, Uthayopas P, Tanaka Y, Tanimura Y, Tatebe O. Lessons Learned Through Driving Science Applications in the PRAGMA Grid. Int. J. Web and Grid Services, Vol.3, No.3, pp 287- 312. 2007 2007 Abstract
Kurniawan, D. and Abramson, D. A WSRF-Compliant Debugger for Grid Applications 21st IEEE International Parallel & Distributed Processing Symposium (IPDPS 2007) March 26-30, 2007, Long Beach, California USA 2007 Abstract
Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. Towards a special-purpose massively parallel computer for ab initio quantum chemistry: What’s on the table, and how do we take it? Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta), doi:10.1007/s00214-007-0306-6, Springer Berlin / Heidelberg, 1432-881X (Print) 1432-2234 (Online), April 28, 2007 2007 Abstract

2006

AuthorsTitleVenueYearPDFAbstract
Abramson, D. Applications Development for the Computational Grid The Eighth Asia Pacific Web Conference, Harbin, China, Invited Key Note Address, 16th – 18th Jan, 2006. Lecture Notes in Computer Science, Volume 3841 / 2006, pp. 1 – 12, ISSN: 0302-9743 2006 Abstract
Russel, A.B.M. and Khan, A.I. (2006). Towards Dynamic Data Grid Framework for eResearch . In Proc. Fourth Australasian Symposium on Grid Computing and e-Research (AusGrid 2006), Hobart, Australia. CRPIT, 54. Buyya, R. and Ma, T., Eds. ACS. 9-16. 2006 Abstract
Ho, T. and Abramson, D. A Unified Data Grid Replication Framework 2nd IEEE International Conference on e-Science and Grid Computing. Dec. 4- 6, 2006, Amsterdam, Netherlands 2006 Abstract
Kommineni, J., Abramson, D. and Tan, J. Communication over a Secured Heterogeneous Grid with the GriddLeS runtime environment 2nd IEEE International Conference on e-Science and Grid Computing. Dec. 4- 6, 2006, Amsterdam, Netherlands. 2006 Abstract
Goscinski, W. and Abramson, D. Motor: A Virtual Machine for High Performance Computing IEEE HPDC 06, Paris 2006 2006 Abstract
Pillai, B., Premaratne, M., Abramson, D., Lee, K., Nirmalathas, A., Lim, C., Shinada, S., Wada, N., and Miyazaki, T. Analytical Characterization of Optical Pulse Propagation in Polarization-Sensitive Semiconductor Optical Amplifiers IEEE Journal of Quantum Electronics, Vol. 42, No. 10, October 2006. 2006 Abstract
Lee, B., Tang, M., Zhang, J., Soon, O. Y., Zheng, C., Arzberger, P., Abramson, D. Analysis of Jobs in a Multi-Organizational Grid Test-bed 6th IEEE International Symposium on Cluster Computing and the Grid 16-19 May 2006, Singapore 2006 Abstract
Zheng, C., Abramson, D., Arzberger, P., Ayyub, S., Enticott, C., Garic, S., Katz, M., Kwak, J., Lee, B. S., Papadopoulos, P., Phatanapherom, S., Sriprayoonsakul, S., Tanaka, Y., Tanimura, Y., Tatebe, O., Uthayopas, P. The PRAGMA Testbed: Building a Multi-Application International Grid Workshop on Grid Testbeds, 6th IEEE International Symposium on Cluster Computing and the Grid 16-19 May 2006, Singapore 2006 Abstract
Peachey, T. C. and Enticott, C. M. Determination of the Best Constant in an Inequality of Hardy, Littlewood and Polya Experimental Mathematics, v 15(1), pp 43-50, 2006. 2006 Abstract
Baldridge, K. K., Sudholt, W., Greenberg, J., Amoreira, C., Potier, Y., Altintas, I., Birnbaum, A., Abramson, D. A., Enticott, C. M., Garic, S. Cluster and grid infrastructure for computational chemistry and biochemistry in Parallel Computing for Bioinformatics and Computational Biology, eds Albert Y. Zomaya, John Wiley & Sons, NJ USA and Canada, pp. 531-550. 2006 Abstract
Pillai, B., Premaratne, M., Abramson, D., Nirmalathas, A. and Lim, C. Pulse Propagation in Polarization-sensitive Semiconductor Optical Amplifiers Joint International Conferences on Optical Internet and Next Generation Network (COIN-NGNCON 2006), which Korea, July 9 – 13, 2006. 2006 Abstract

2005

AuthorsTitleVenueYearPDFAbstract
Abramson, D. A., Amoreira, C., Baldridge, K. K., Berstis, L., Kondrick, C., Peachey, T. C. A flexible grid framework for automatic protein-ligand docking Proceedings of the Second IEEE International Conference on e-Science and Grid Computing, Dec. 4- 6, 2006, IEEE Computer Society, Los Alamitos USA, pp. 1-8 2005 Abstract
Lewis, A. Abramson, D. and Peachey, T. RSCS: A Parallel Simplex Algorithm for the Nimrod/O Optimization Toolset Scientific Programming, 14(1), 1-11 (2006). IOS Press. 2005 Abstract
Sudholt, W., Baldridge, K., Abramson, D., Enticott, C. and Garic, S. Application of grid computing to parameter sweeps and optimizations in molecular modeling Future Generation Computer Systems, 21 (2005), 27-35. Also appeared in International Conference on Computational Sciences, ICCS04, Krakow Poland, June 6 – 9, 2004. 2005 Abstract
Tan, J, Abramson, D. and Enticott, C. Bridging Organizational Network Boundaries on the Grid IEEE Grid 2005, Seattle, Nov 2005 2005 Abstract
Chin P.W., Lewis D. G. and Giddy J. P. A Monte Carlo solution for external beam photon radiotherapy verification The Monte Carlo Method: Versatility Unbounded in a Dynamic Computing World, Chattanooga, Tennessee, April 2005 pp 17-21. 2005 Abstract
Abramson D., Peachey T. and Lewis A. Model Optimization and Parameter Estimation with Nimrod/O The International Conference on Computational Science, May 28-31, 2006, University of Reading, UK 2005 Abstract
Abramson, D., Kommineni, J. and Altinas, I. Flexible IO services in the Kepler Grid Workflow Tool IEEE Conference on e-Science and Grid Computing, Melbourne, Dec 2005. 2005 Abstract
Chan, P. and Abramson, D. Netfiles: An Enhanced Stream-based Communication Mechanism International Symposium on High Performance Computing (ISHPC), Higashikasugano, Nara City, Japan, Sept 7th – 9th, 2005 2005 Abstract
Abramson, D., Lynch, A., Takemiya, H., Tanimura, Y., Date, S., Nakamura, H., Jeong, K., Zhu, J., Lu, Z., Lee, H., Wang, C., Shih, H., Molina, T., Baldridge, K., Li, W. and Arzberger, P. Deploying Scientific Applications to the PRAGMA Grid Testbed: Strategies and Lessons 6th IEEE International Symposium on Cluster Computing and the Grid 16-19 May 2006, Singapore. 2005 Abstract
Buyya, R., Murshed, M, Abramson, D. and Venugopal, S. Scheduling Parameter Sweep Applications on Global Grids: A Deadline and Budget Constrained Cost-Time Optimisation Algorithm International Journal of Software: Practice and Experience (SPE), Volume 35, Issue 5, pp 491 – 512, Wiley Press, New York, USA, April 25, 2005. 2005 Abstract
Tran, N, Abramson, D., Mingins, C. Call-Ordering Constraints 12th ASIA-PACIFIC Software Engineering Conference (APSEC 2005), Taipei , Taiwan, December 15-17, 2005 2005 Abstract
Buyya, R., Date, S., Mizuno-Matsumoto, Y., Venugopal, S. and Abramson, D. Neuroscience Instrumentation and Distributed Analysis of Brain Activity Data: A Case for eScience on Global Grids Journal of Concurrency and Computation: Practice and Experience (CCPE), Volume 17, No. 15, 1783-1798pp, Wiley Press, New York, USA, Dec. 2005. 2005 Abstract

2004

AuthorsTitleVenueYearPDFAbstract
Buyya, R., Abramson, D. and Venugopal, S. The Grid Economy Special Issue on Grid Computing, Proceedings of the IEEE, Manish Parashar and Craig Lee (editors), Volume 93, Issue 3, 698-714pp, IEEE Press, New York, USA, March 2005 2004 Abstract
Goscinski, W and Abramson, D. Legacy Application Deployment over Heterogeneous Grids using Distributed Ant IEEE Conference on e-Science and Grid Computing, Melbourne, Dec 2005 2004 Abstract
Abramson, D. and Kommineni, J. A Flexible IO Scheme for Grid Workflows . IPDPS-04, Santa Fe, New Mexico, April 2004 2004 Abstract
Sudholt, W., Baldridge, K., Abramson, D., Enticott, C. and Garic, S. Parameter Scan of an Effective Group Difference Pseudopotential Using Grid Computing New Generation Computing 22 (2004) 125-135 2004 Abstract
Goscinski, W. and Abramson, D. Distributed Ant: A System to Support Application Deployment in the Grid IEEE Grid 2004, November, 2004, Pittsburgh, PA 2004 Abstract
Ho, T. and Abramson, D. The GriddLeS Data Replication Service IEEE Conference on e-Science and Grid Computing, Melbourne, Dec 2005. 2004 Abstract
Abramson, D., Dongarra, J., Meek, E., Roe, P and Shi, Z. Simplified Grid Computing through Spreadsheets and NetSolve Omiya Sonic City, Saitama, Tokyo, Japan, July 20-22, 2004, HPC Asia 2004 2004 Abstract
Lewis, A., Abramson, D. and Peachey, T. RSCS: A Parallel Simplex Algorithm for the Nimrod/O Optimization Toolset International Symposium on Parallel and Distributed Computing, In association with HeteroPar’04, July 5th – 8th 2004, University College Cork, Ireland. 2004 Abstract
Jones R., Peng D., Chaperon P., Tan M., Abramson D. and Peachey T. Structural Optimization with Damage Tolerance Constraints Theoretical and Applied Fracture Mechanics, 43, 2005, pp. 133-155. 2004 Abstract
Russel, A.B.M. and Bevinakoppa, S. Predicting the Performance of Data Transfer in a Grid Environment In Chin-Sheng Chen, Joaquim Filipe, Isabel Seruca, José Cordeiro, editors, ICEIS 2005, Proceedings of the Seventh International Conference on Enterprise Information Systems, Miami, USA, May 25-28, 2005. pages 176-181, 2005. 2004 Abstract
Kommineni, J and Abramson, D. Building Virtual Applications for the GRID with Legacy Components 2004 Abstract
Beasley, J.E., Krishnamoorthy, M., Sharaiha, Y.M. and Abramson, D. Displacement problem and dynamically scheduling aircraft landings J. Opl Res.Soc. 55 (2004) 54-64. 2004 Abstract
Nam, T., Abramson, D. and Mingins, C. A Taxonomy of Call Ordering Problems APSEC2004, Nov. 30 -Dec. 3, 2004, Busan, Korea 2004 Abstract

2003

AuthorsTitleVenueYearPDFAbstract
Searle, A, Gough, J. K. and Abramson, D. A. DUCT: An Interactive Define-Use Chain Navigation Tool for Relative Debugging AADebug’03. Ghent, Belgium, September 2003 2003 Abstract
Smith, K. A., Abramson, D. and Duke, D. Hopfield Neural Networks for Timetabling: Formulations, Methods, and Comparative Results Computers & Industrial Engineering, 44 (2003), pp 283 – 305 2003 Abstract
Lewis, A., Abramson, D. and Peachey, T. An Evolutionary Programming Algorithm for Automatic Engineering Design, PPAM 2003, Fifth International Conference on Parallel Processing and Applied Mathematics, Czestochowa, Poland, Lecture Notes in Computer Science, Volume 3019 / 2004, pp. 586 – 594, ISBN: 3-540-21946-3, September 7-10, 2003 2003 Abstract
Peachey, T., Abramson, D., Lewis, A., Kurniawan, D. and Jones, R. Optimization using Nimrod/O and its Application to Robust Mechanical Design PPAM 2003, Fifth International Conference on Parallel Processing and Applied Mathematics, Czestochowa, Poland, Lecture Notes in Computer Science, Volume 3019 / 2004, pp. 730 – 737, ISBN: 3-540-21946-3, September 7-10, 2003 2003 Abstract
Abramson, D., Finkel, R., Kurniawan, D., Kowalenko, V. and Watson, G. Parallel Relative Debugging with Dynamic Data Structures 16th International Conference on Parallel and Distributed Computing Systems, pp 22 ‚Äì 29, August 13 – 15, 2003 Reno, Nevada, USA 2003 Abstract
Tran, N., Mingins, C., and Abramson, D. Managed Assertions for Component Contracts’, Proceedings of the Seventh World Conference on Integrated Design and Process Technology (IDPT-2003), 3-5 December 2003, Austin, Texas 2003 Abstract
Tran, N., Mingins, C., and Abramson, D. Design and Implementation of Assertions for the Common Language Infrastructure IEE Proceedings – Software, 150(5), October 2003, pp. 329-336 2003 Abstract
Lewis, A. and Abramson, D. An Evolutionary Programming Algorithm for Multi-Objective Optimisation Proc. 2003 Congress on Evolutionary Computation (CEC 2003), vol. 3, pp. 1926-1932, Canberra, Dec. 2003 2003 Abstract
Abramson, D., Barak, A and Enticott, C. Job Management in Grids of MOSIX Clusters 16th International Conference on Parallel and Distributed Computing Systems, pp 36 ‚Äì 42, August 13 – 15, 2003 Reno, Nevada, USA 2003 Abstract
Buyya, R, Date, S., Mizuno-Matsumoto, Y., Venugopal, S and Abramson, D. Composition of Distributed Brain Activity Analysis and its On-Demand Deployment on Global Grids, New Frontiers in High-Performance Computing: Proceedings of the 10th International Conference on High Performance Computing (HiPC 2003) Workshops (Dec. 17, 2003, Hyderabad, India), ISBN: 81-88901-05-9, Elite Publishing House, New Delhi, India 2003 Abstract
Buyya, R., Branson, K., Giddy, J. Abramson, D. The Virtual Laboratory: Enabling On Demand Drug Design with the Worldwide Grid Concurrency and Computation: Practice and Experience, 15(1), 2003 2003 Abstract
Abramson, D and Watson, G. Debugging Scientific Applications in the .NET Framework Future Generation Computer Systems, Vol. 19 issue 5, June 2003., pp 665 – 678 2003 Abstract

2002

AuthorsTitleVenueYearPDFAbstract
Abramson, D, Buyya, R. and Giddy, J. A Computational Economy for Grid Computing and its Implementation in the Nimrod-G Resource Broker Future Generation Computer Systems. Volume 18, Issue 8, Oct-2002. 2002 Abstract
Abramson, D., Watson, G. and Dung, L. Guard: A Tool for Migrating Scientific Applications to the .NET Framework 2002 International Conference on Computational Science (ICCS 2002), Amsterdam, The Netherlands, April 21st 2002, pp 834 – 843 2002 Abstract
Buyya, R, Abramson, D. Giddy, J and Stockinger, H. Economic Models for Resource Management and Scheduling in Grid Computing Journal of Concurrency: Practice and Experience, Grid computing special issue 14/13-15, 2002, pp 1507 – 1542 2002 Abstract
Buyya, R, Murshed, M., and Abramson, D. A Deadline and Budget Constrained Cost-Time Optimization Algorithm for Scheduling Task Farming Applications on Global Grids The 2002 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, Nevada, USA, June 2002 2002 Abstract

2001

AuthorsTitleVenueYearPDFAbstract
Abramson, D., Roe, P., Kotler L and Mather, D. ActiveSheets: Super-Computing with Spreadsheets 2001 High Performance Computing Symposium (HPC’01), Advanced Simulation Technologies Conference, April 22-26, 2001, pp 110 ‚Äì 115, Seattle, Washington (USA). 2001 Abstract
Abramson, D, Lewis, A. and Peachy, T. Case Studies in Automatic Design Optimisation using the P-BFGS Algorithm 2001 High Performance Computing Symposium (HPC’01), Advanced Simulation Technologies Conference, April 22-26, 2001, pp 104 ‚Äì 109, Seattle, Washington (USA). 2001 Abstract
Buyya, R, Abramson, D., and Giddy, J. A Case for Economy Grid Architecture for Service Oriented Grid Computing 10th Heterogeneous Computing Workshop April 23, 2001 in conjunction with IPDPS in San Francisco, California 2001 Abstract
Buyya, R., Stockinger, H., Giddy, J. and Abramson, D. Economic Models for Management of Resources in Peer-to-Peer and Grid Computing Technical Track on Commercial Applications for High-Performance Computing, SPIE International Symposium on The Convergence of Information Technologies and Communications (ITCom 2001), August 20-24, 2001, Denver, Colorado, USA 2001 Abstract
Randall, M. and Abramson, D. A General Meta-Heuristic Based Solver for Combinatorial Optimisation Problems Combinatorial Optimisation and Applications (COAP)., 20, 2001, pp 185 – 210. 2001 Abstract
Chan, P. and Abramson, D. NetFiles: A Novel Approach to Parallel Programming of Master/Worker Applications HPC Asia 2001, 24-28 September 2001 • Royal Pines Resort Gold Coast, Queensland, Australia 2001 Abstract
Watson, G., Abramson, D. Parallel Relative Debugging for Distributed Memory Applications: A Case Study International Conference on Parallel and Distributed Processing Techniques and Applications June 25-28, 2001, Las Vegas, Nevada, USA 2001 Abstract
Abramson D, Lewis A, Peachey T, Fletcher, C. An Automatic Design Optimization Tool and its Application to Computational Fluid Dynamics SuperComputing 2001, Denver, Nov 2001. 2001 Abstract
Abramson, D. Parallel Execution Mechanism for Spreadsheets Australian Provision Patent PQ8365/01. US Patent lodged (Number 20010056440). 2001 Abstract
Abramson, D. Australian Provision Patent PR0553/01. 2001 Abstract
Gedge, R. and Abramson, D. The Virtual Tea Room – experiences with a new type of social space to appear, 7th International Workshop on Groupware, 6-8 September 2001, Darmstadt, Germany 2001 Abstract

Pre 2000

AuthorsTitleVenueYearPDFAbstract
Abramson, D., Power, K., and Sosic, R. Simulating Computer Networks using Clusters of PCs HPC-TelePar’99 at the 1999 Advanced Simulation Technologies Conference (ASTC’99), April 11-15, 1999, San Diego, California,USA 1999 Abstract
Abramson, D. A. and Randall, M. A Simulated Annealing code for General Integer Linear Programs Annals of Operations Research 86(1999) 1999 Abstract
Smith, K. A, Abramson, D. and Duke, D. Efficient Timetabling Formulations for Hopfield Neural Networks Artificial Neural Networks in Engineering Conference, 1999 (ANNIE’99). 1999 Abstract
Randall, M. and Abramson, D. A General Parallel TABU Search Algorithm for Combinatorial Optimisation Problems Proceedings of 1999 Parallel and Real Time Conference (PART-99), December 1999, Melbourne, pp 68 – 79. 1999 Abstract
Giles, S. and Abramson, D. The Virtual Tea Room: Integrating Video into Everyday Life International Wireless and Telecommunications Symposium, Malaysia, 17-21st May, 1999 1999 Abstract
Abramson, D.A. , Dang, H. and Krisnamoorthy, M. Simulated Annealing Cooling Schedules for the School Timetabling Problem Asia-Pacific Journal of Operational Research, 16 (1999) 1-22. 1999 Abstract
Giles, S. and Abramson, D. The Video Wall Project – Video Technology at the Leading Edge in Education Learning Technologies ’99, 20 – 23 October, 1999 Noosa, Queensland. 1999 Abstract
Postula, A., Chen, S., Jozwiak, L and Abramson, D. Automated Synthesis of Interleaved Memory Systems for Custom Computing Machines Workshop on 1998 Abstract
Abramson, D. Logothetis, P, Postula, A., Randall, M. FPGA Based Custom Computing Machines for Irregular Problems Fourth International Symposium on High-Performance Computer Architecture, (HPCA98), February 1-4, 1998, Las Vegas, Nevada 1998 Abstract
Smith, K. A., Abramson, D. A., Duke, D. Hopfield Neural Networks for Timetabling: Formulations, Methods and Comparative Results in Business Systems Research Vol I, School of Business Systems, Clayton Vic Australia, pp. 196-224. 1998 Abstract
De Silva, A. and Abramson, D. A. A Parallel Interior Point Method and its Application to Facility Location Problems Computational Optimization and Applications, Volume 9, Number 3, March 98, pp 249 – 273 1998 Abstract
Postula, A., Abramson, D., Ziping Fang and Logothetis, P. A Comparison of High Level Synthesis and Register Transfer Level Design Techniques for Custom Computing Machines Configware Minitrack in the Software Technology Track of the Thirty-First Hawaii International Conference on System Sciences (HICSS-31), Hawaii, Jan 1998. 1998 Abstract
Abramson, D, Logothetis, P., Randall, M and Postula, A. A Tail of 2n cities: Performing Combinatorial Optimisation using Linked Lists on Special Purpose Computers The International Conference on Computational Intelligence and Multimedia Applications – 1998 (ICCIMA’98), Gippsland, Victoria, Australia, 9-11 February 1998, pp 17 ‚Äì 26. 1998 Abstract
Abramson, D., Smith, K., Logothetis, P. and Duke, D. FPGA Based Implementation of a Hopfield Neural Network for Solving Constraint Satisfaction Problems Workshop on Computational Intelligence of the 24th Euromicro Conference, Västerås, Sweden, August 25th-27th, 1998 1998 Abstract
Abramson, D, Logothetis, P., Randall, M and Postula, A. Application Specific Computers for Combinatorial Optimisation The Australian Computer Architecture Workshop, Sydney, Feb 1997, Springer-Verlag Singapore Pty. Ltd., Singapore, pp 29 – 43. 1997 Abstract
Sosic, R., Abramson, D. A. Guard: a relative debugger Software – Practice & Experience, vol 27, John Wiley & Sons, Ltd, California USA, pp. 185-206. 1997 Abstract
Abramson, D and Watson, G. Relative Debugging for Parallel Systems PCW ’97, September 25 and 26, 1997, Australian National University, Canberra, pp P1-C-1 ‚Äì P1-C-8. 1997 Abstract
D. Abramson, I. Foster, J. Giddy, A. Lewis, R. Sosic, R. Sutherst, N. White The Nimrod Computational Workbench: A Case Study in Desktop Metacomputing Australian Computer Science Conference (ACSC 97), Macquarie University, Sydney, Feb 1997, pp 17 – 26 1997 Abstract
Lewis, A, Abramson, D and Simpson, R. Parallel non-linear optimization : Towards the design of a decision support system for air quality management IEEE Supercomputing 97, San Jose, 1997. 1997 Abstract
Abramson D., Foster, I., Michalakes, J. and Sosic R. Relative Debugging: A new paradigm for debugging scientific applications the Communications of the Association for Computing Machinery (CACM), Vol 39, No 11, pp 67 – 77, Nov 1996 1996 Abstract
Abramson, D., Dang, H. and Krishnamoorthy, M. A Comparison of Two Methods for Solving 0-1 Integer Programs Using a General Purpose Simulated Annealing Annals of Operations Research, 63 (1996), pp 129 – 150 1996 Abstract
Abramson, D.A. and Sosic, R. A Debugging and Testing Tool for Supporting Software Evolution Journal of Automated Software Engineering, 3 (1996), pp 369 – 390 1996 Abstract
Abramson, D.A., Sosic, R. and Watson, G. Implementation Techniques for a Parallel Relative Debugger International Conference on Parallel Architectures and Compilation Techniques – PACT ’96, October 20-23, 1996, Boston, Massachusetts, USA 1996 Abstract
Postula, A., Abramson, D. and Logothetis, P. The Design of a Specialised Processor for the Simulation of Sintering Proceedings of the 22nd Euromicro Conference, September 2-5, 1996, Prague, Czech Republic. 1996 Abstract
Postula, A., Abramson, D. and Logothetis, P. Synthesis for Prototyping of Application Specific Processors Invited Key Note Talk, 3rd Asia Pacific Conference on HDL (APCHDL-96), Jan 8-10, 1996, Bangalore, India. 1996 Abstract
McKay, A. and Abramson, D. Evaluating the Performance of a SISAL implementation of the Abingdon Cross Image Processing Benchmark International Journal of Parallel Programming, Vol 33, Number 2, pp 105 – 134, 1995. 1995 Abstract
Abramson, D.A. and Sosic, R. A Debugging Tool for Software Evolution CASE-95, 7th International Workshop on Computer-Aided Software Engineering, Toronto, Ontario, Canada, July 1995, pp 206 – 214. Also appeared in proceedings of 2nd Working Conference on Reverse Engineering, Toronto, Ontario, Canada, July 1995 1995 Abstract
Lewis, A., Abramson D., Sosic R., Giddy J. Tool-based Parameterisation : An Application Perspective Computational Techniques and Applications Conference, Melbourne, July 1995 1995 Abstract
Abramson, D., Cameron, G. DCompose: A Tool for Measuring Data Decomposition on Distributed Memory Multiprocessors Current and Future Trends in Parallel and Distributed Computing, Ed Albert Zomaya, Thomson Computer Press, Chapter 15, pp 411 – 433, ISBN 1-85032-188-4, 1995 1995 Abstract
Abramson, D.A. and Sosic, R. Relative Debugging using Multiple Program Versions Key Note Address, 8th Int. Symp. on Languages for Intensional Programming , Sydney, 3-5th May, 1995. In Intensional Programming I, World Scientific, ISBN 981 – 02 – 2400 – 1. 1995 Abstract
Abramson D., Sosic R., Giddy J. and Hall B. Nimrod: A Tool for Performing Parametised Simulations using Distributed Workstations The 4th IEEE Symposium on High Performance Distributed Computing, Virginia, August 1995, pp 112-121 1995 Abstract
Abramson, D, de Silva, A, Randall, M and Postula, A. Special Purpose Computer Architectures for High Speed Optimisation Parallel and Real Time Computing conference (PART-95), pp 13 – 20, September, 1995, Perth 1995 Abstract
Abramson D., Foster, I., Michalakes, J. and Sosic R. Relative Debugging and its Application to the Development of Large Numerical Models Proceedings of IEEE Supercomputing 1995, San Diego, December 95. Selected as best paper 1995 Abstract
Wail, S. and Abramson, D.A. Can Data-flow Machines be programmed with an Imperative Language? Appearing in 1995 Abstract
Abramson, D.A. , Dang, H. and Krisnamoorthy, M. Cooling Schedules for Simulated Annealing Based Scheduling Algorithms Proceeding of the 17th Australian Computer Science Conference, pp 541 – 550. Univ of Caterbury, Christchurch, NZ, Jan 1994 1994 Abstract
Abramson, D., Mills, G. and Perkins, S. Parallelisation of a Genetic Algorithm for the Computation of Efficient Train Schedules Proceedings of 1993 Parallel Computing and Transputers Conference, Brisbane, pp 139 – 149 Nov 1993, IOS Press 1994 Abstract
Abramson , D., Sosic , R., Giddy , J., Cope , M. The Laboratory Bench: Distributed Computing for Parametised Simulations 1994 Parallel Computing and Transputers Conference, Wollongong, Nov 94, pp 17 – 27. 1994 Abstract
Abramson, D. Predicting the Performance of Scientific Applications on Distributed Memory Multiprocessors The IEEE 1994 Scalable High Performance Computing Conference. Knoxville Tennessee, pp 285 – 292, May 23-25 1994. 1994 Abstract
Abramson, D. Method for Testing and Debugging Computer Programs Australian Provisional Patent, PM5196/94. US Patent Number 5,838,975. 1994 Abstract
Abramson, D.A., Cope, M. and McKenzie, R. Modelling Photochemical Pollution using Parallel and Distributed Computing Platforms Proceedings of PARLE-94, pp 478 – 489, Athens, Greece, July 1994. 1994 Abstract
Abela, J., Abramson, D., Krishnamoorthy, M. De Silva, A and Mills, G. Computing Optimal Schedules for Landing Aircraft The 12th National Conference of the Australian Society for Operations Research. Adelaide, July 7-9, 1993, pp 71 – 90 1993 Abstract
Jones, D., Hulskamp, J. and Abramson, D. BABBAGE: A tool to facilitate the implementation of master-slave grid oriented applications on distributed computer systems Proceedings of 1993 Parallel Computing and Transputers Conference, Brisbane, pp 350 – 359, Nov 1993. 1993 Abstract
Abramson, D., Dang, H. and Krishnamoorthy, M. Enhanced Simulated Annealing Through Linear Programming Preprocessing The 12th National Conference of the Australian Society for Operations Research. Adelaide, July 7-9, 1993, pp 91- 114. 1993 Abstract
Rotstayn, L., Francis, R., Abramson, D. and Dix, M. Suitability of GCM physics for execution on SIMD parallel computers J. Meteor. Soc. Japan, Vol 71,1993 . pp 297-303. 1993 Abstract
Abramson, D.A. and Rosenberg, J. Hardware Support for Program Debuggers in a Paged Virtual Memory Computer Architecture News, June 1983, Vol 11, No 2, pp 8-19. 1993 Abstract
Abramson, D. A. High Performance Application Specific Architectures Proceedings of 26th Hawaii International Conference on System Sciences, Kauai, Hawaii, pp 92 – 95, Jan 1993 1993 Abstract
De Silva, A. and Abramson, D. Computational Experience with the Parallel Progressive Hedging Algorithm for Stochastic Linear Programs Proceedings of 1993 Parallel Computing and Transputers Conference, pp 164 – 174, Brisbane, Nov 1993 1993 Abstract
Abramson, D., Cameron, G., Dix, M. and Makies, M. STORM: A Bus Based Shared Memory Multiprocessor for Climate Modelling Proceedings of 26th Hawaii International Conference on System Sciences, Kauai, Hawaii, pp 96 – 105, Jan 1993. 1993 Abstract
Jones, D., Hulskamp, J. and Abramson, D. Tools to facilitate the implementation of grid based finite difference algorithms on distributed computer systems Proceedings of World Transputer Conference, Aachen, 20-22 September, Germany, 1993 1993 Abstract
Rosenberg, J. Keedy, J. L. and Abramson, D. Addressing Mechanisms for Large virtual Memories The Computer Journal, August 1992. 1992 Abstract
Rawling, M., Francis, R. and Abramson, D. Performance Bounds for the Conservative Parallel Discrete Event Simulation of VLSI Circuits and Systems 15th Australian Computer Science Conference, Hobart, Jan 1992, pp 753 – 767. 1992 Abstract
Abramson, D. A. and Abela, J. A Parallel Genetic Algorithm for Solving the School Timetabling Problem IJCAI workshop on Parallel Processing in AI, Sydney, August 91. Also appearing in 15 Australian Computer Science Conference, Hobart, Feb 1992, pp 1 – 11. 1992 Abstract
Rawling, M., Francis, R. and Abramson, D. Potential Performance of Parallel Conservative Simulation of VLSI Circuits and Systems IEEE/ACM 25th Annual Simulation Symposium, pp 71 – 80. 1992. 1992 Abstract
Abramson, D.A. A Very High Speed Architecture to Support Simulated Annealing IEEE Computer, May 1992, pp 27 – 34. 1992 Abstract
Abramson, D.A. and Egan, G. Design Considerations for a High Performance Dataflow Multiprocessor Chapter 4, 1991 Abstract
Abramson, D.A. and Freidin, J. A Parallel Router for Printed Circuit Boards 24th Hawaii International Conference on System Sciences, pp 164 – 171, Jan 1991. 1991 Abstract
Abramson, D., Francis, R. and Dix, M. A Retargettable Programming Environment for Studying Climate Models, Computational Techniques and Applications (CTAC-91), pp 91 – 100, July 1991. 1991 Abstract
Abramson, D.A., Dix, M., Whiting, P. A Study of the Shallow Water Equations on Various Parallel Architectures 14th Australian Computer Science Conference, pp 06-1 – 06-12, Sydney, 1991 1991 Abstract
Francis, R., Abramson, D., Dix, M. and Rotstayn, L. SIMD Climate Modeling Parallel Computing 91, pp 471 – 482, London, September 1991. 1991 Abstract
McKay, A and Abramson, D. Using SISAL to implement the Abingdon Cross Image Processing Benchmark 4th Australian SuperComputing Conference, Gold Coast, Dec 1991, pp 107 – 116. 1991 Abstract
Abramson, D. A. Constructing School Timetables using Simulated Annealing: Sequential and Parallel Algorithms Management Science, Vol 37, No 1, Jan 1991, pp 98 – 113 1991 Abstract
Jones, D, Abramson, D.A. and Hulskamp, J. Porting Parallel Programs from Shared Memory Multiprocessors to Transputer Based Message Passing Systems 1991 Australian Transputer and OCCAM users group, Canberra, September 1991. 1991 Abstract
Abramson, D.A., et al, Super Computing Applications in the CSIRO-DIT High Performance Computation Project 3rd Australian Supercomputing Conference, Melbourne, Dec 1990 1990 Abstract
Abramson, D and Egan, G, The RMIT Dataflow Computer: A Hybrid Architecture The Computer Journal, Vol 33, No 3, June 1990, pp 230 – 240. 1990 Abstract
Abramson, D. An Apparatus for use in Producing a Timetable Australian Provisional Patent, PK0925/90. 1990 Abstract
Abramson, D.A. Case Studies in Parallel Processing Proceedings of 1989 International Conference on Computation, Applications and Techniques (CTAC 89) Brisbane, 1989, Hemisphere Publishing. 1989 Abstract
Abramson, D.A., Ramamohanarao, K., and Ross, M. A Scalable Cache Coherence Algorithm using a Selectively Clearable Cache Memory Australian Computer Journal, Vol 21, No 1, Feb 1989. 1989 Abstract
Abramson, D. A. Using a dataflow computer for functional logic simulation Third International Conference on Supercomputing, Boston, Massachusetts, May 15-20, 1988. 1988 Abstract
Abramson, D, and Egan, G. An Overview of the RMIT/CSIRO Parallel Systems Architecture Project Australian Computer Journal, Vol 20, No 3, August 1988. 1988 Abstract
Abramson, D. and Rosenberg, J. The Micro-Architecture of a Capability Based Computer Proceedings of ACM 19th International Conference on Microprogramming, New York, 1986. 1986 Abstract
Abramson, D. and Rosenberg, J. Tools for Microcode development in a Capability based computer Proceedings of ACM 19th International Conference on Microprogramming, New York, 1986. 1986 Abstract
Yap, R., Rosenberg, J. and Abramson, D.A. A C compilerfor a Capability Based Computer Proceedings of the 9th Australian Computer Sciences Conference, Canberra Jan 1985, pp 23 – 34. 1985 Abstract
Abramson, D.A. and Keedy, J.L. Implementing a Large Virtual Memory in a Distributed Computer System Proceedings of Eighteenth Annual Hawaii International Conference on System Sciences, January 2-4, 1985. 1985 Abstract
Rosenberg J and Abramson D.A.. MONADS PC – A Capability-Based Workstation to Support Software Engineering Proceedings of Eighteenth Annual Hawaii International Conference on System Sciences, January 2-4, 1985. (Selected as Best paper in Hardware track) 1985 Abstract
Rosenberg, J. and Abramson, D.A. The MONADS Architecture: Motivation and Implementation Proceedings of First Pan Pacific Computer Conference, Melbourne, 1985. Invited Paper. 1985 Abstract
Abramson, D.A. and Rosenberg, J. Supporting a Capability-based Architecture in Silicon 4th Australian Micro-electronics conference, Sydney, May 1985, pp 43 – 50. 1985 Abstract
Abramson, D.A. and Rosenberg, J. A Vertical User Interface to Horizontal Microcode via a Retargetable Microassembler Proceedings of 8th Australian Computer Science Conference, Feb 1985, Melbourne, Australia, pp 8-1 – 8-10. 1985 Abstract
Abramson, D.A. A Microcode Emulator for Undergraduate Teaching Proc. 7th Australian Sciences Conference, Adelaide, Australia, Feb 1984, pp 3-1 – 3-10, . 1984 Abstract
Abramson, D.A. The MONADS II Computer System, Proc. 6th Australian Sciences Conference, Sydney, Februrary 1983, pp 1 – 10. 1983 Abstract
Abramson, D.A. Hardware for Capability Based Addressing Proc. 9th Australian Computer Conference, Hobart, pp 101-115, August, 1982. 1982 Abstract
Keedy, J.L., Abramson D., Rosenberg, J. and Rowe, D.M. A Comparison of the MONADS II and III Computer Systems Proc. 9th Australian Computer Conference, Hobart, August 1982, pp 581 – 58 . 1982 Abstract
Keedy, J.L., Abramson, D., Rosenberg, J. and Rowe, D.M. The MONADS Project Stage 2: Hardware Designed to Support Software Engineering Techniques Proc. 9th Australian Computer Conference, Hobart, August 1982, pp 575 – 580, . 1982 Abstract
Abramson, D.A. A Technique for Enhancing Processor Architecture Proc. 5th Australian Computer Science Conference 1982 Abstract
Abramson, D.A. Hardware Management of a Large Virtual Memory, Proc. 4th Australian Computer Science Conference Brisbane (Australian Computer Science Communications 3, 1, pp. 1-13). 1981 Abstract