Home » Academic » Publications

Publications

For a list of publications, see UQ e-Space.

 

1 Konagurthu Arun S., Subramanian Ramanan, Allison Lloyd, Abramson David, Stuckey Peter J., Garcia de la Banda Maria, Lesk Arthur M. Universal Architectural Concepts Underlying Protein Folding Patterns Frontiers in Molecular Biosciences, Vol 7, 2021, pp491, DOI: 10.3389/fmolb.2020.612920, ISSN:2296-889X 2021
2 Parashar, M. and Abramson, D. Translational Computer science for Science and Engineering IEEE Computing in Science & Engineering, DOI 10.1109/MCSE.2021.3109962 2021
3 Lesk, A.M., Konagurthu, A.S., Allison, L., de la Banda, M.G., Stuckey, P.J. and Abramson, D. Computer modelling of a potential agent against SARS‐Cov ‐2 (COVID ‐19) protease. Proteins. doi:10.1002/prot.25980 2020
4 Abramson, D., Parashar, M., Arzberger, P. Translation computer science – Overview of the special issue Journal of Computational Science, 2020, 101227, ISSN 1877-7503, https://doi.org/10.1016/j.jocs.2020.101227. 2020
5 Abramson D., Jin C., Luong J., Carroll J. A BeeGFS-Based Caching File System for Data-Intensive Parallel Computing Supercomputing Frontiers. SCFA 2020. Lecture Notes in Computer Science, vol 12082. Springer, Cham. 2020
6 Dinh, M., Trung, C. and Abramson. Tracking scientific simulation using online time-series modelling The 20th IEEE/ACM International Symposium on Cluster, Cloud and Internet Computing, May 11-14, 2020, Melbourne, Victoria, Australia. 2020
7 Endrei, M., Jin, C., Dinh, M. N., Abramson, D., Poxon, H., DeRose, L., & de Supinski, B. R. Statistical and machine learning models for optimizing energy in parallel applications. The International Journal of High Performance Computing Applications, 33(6), 1079–1097. https://doi.org/10.1177/1094342019842915. 2019
8 Abramson, D. and Parashar, M. Translational Research in Computer Science Computer, vol. 52, no. 9, pp. 16-23, Sept. 2019, doi: 10.1109/MC.2019.2925650 2019
9 Abramson, D., Carroll, J., Jin, C., Mallon, M., van Iperen, Z., Nguyen, H., McRae, A. and Ming, L. A Cache-based Data Movement Infrastructure for On-demand Scientific Cloud Computing Supercomputing Asia 2019, March 11-14th, 2019, Singapore. 2019
10 Endrei, M., Jin, C., Dinh, M., Abramson, D., Poxon, H. DeRose. L., and De Supinski, B. Energy Efficiency Modeling of Parallel Applications IEEE Supercomputing SC18, Dallas Texas, November 2018. https://doi.org/10.1109/SC.2018.00020 2018
11 Chao, J., de Supinski, B., Abramson, D., Poxon, H., De Rose, L., Dinh, M., Endrei, M., Jessup, E. A survey on software methods to improve the energy efficiency of parallel computing in the application layer International Journal of High Performance Computing Application, Vol 31, Issue 6, 2017, pp 517-549, doi:10.1177/1094342016665471. 2017
12 Subramanian, R., Allison, L., Stuckey, P. J., Garcia de la Banda, M., Abramson, D., Lesk, A. M., and Konagurthu, A. Statistical compression of protein folding patterns and inference of recurrent sub-structural themes Data Compression Conference (DCC’2017), Salt Lake City, Utah, 4 – 7 April, 2017. 2017
13 Nguyen, H., van Iperen, Z., Raghunath, S., Abramson, D., Kipouros, T. and Somasekharan, S. Multi-objective optimisation in scientific workflow 2017 International Conference on Computational Science, Zurich, 12-14 June, 2017. 2017
14 Nguyen, H., Bland, L., Roberts, T., Guru, S., Dinh, M and Abramson, D. A computational pipeline for the IUCN risk assessment for Meso-American reef ecosystem 13th IEEE eScience Conference, Auckland, New Zealand 24th – 27th October, 2017. 2017
15 Abramson, D., Carroll, J., Jin, C. and Mallon, M. A Metropolitan Area Infrastructure for Data Intensive Science 13th IEEE eScience Conference, Auckland, New Zealand 24th – 27th October, 2017. 2017
16 Endrei, M., Jin, C., Dinh, M., Abramson, D., Poxon, H. DeRose. L., and De Supinski A Bottleneck-centric Tuning Policy for Optimizing Energy in Parallel Programs 2017 International Conference on Parallel Computing (ParCo), Bologna, Italy 12-15, September 2017. https://doi.org/10.3233/978-1-61499-843-3-265 2017
17 Dinh, M., Abramson, D. and Chao, J. Runtime verification of large scientific codes using statistics ICCS 2016, June 2016, San Diego. 2016
18 Dinh, M., Chao, J., Abramson, D. and Jeffery, C. Runtime Verification of Scientific Computing: Towards an Extreme Scale 5th Workshop on Extreme-Scale Programming Tools (ESPT), Held in conjunction with SC16, Salt Lake City, 13th November, 2016. 2016
19 Nguyen, H., Abramson, D., Guru, S., Sun, Y. CoESRA: From virtual desktop to science gateway Gateways 2016, November 2 – 3, San Diego, 2016. 2016
20 Quenette, S and Xi, Y and Mansour, J, Moresi, L and Abramson, D. Underworld-GT applied to Guangdong, a tool to explore the geothermal potential of the crust Journal of Earth Science, Vol 26, No 1, pp 78 – 88, Feb 2015, doi 10.1007/s12583-015-0517-z. 2015
21 Nguyen, H., Abramson, D, Kipouros, T, Janke, A and Galloway, G. WorkWays: Interacting with Scientific Workflows Concurrency Computation: Practice and Experience, 27: 4377–4397, 21 May 2015, doi: 10.1002/cpe.3525. 2015
22 Beringer, J., Hutley, L. B., Abramson, D., Arndt, S. K., Briggs, P., Bristow, M., Canadell, J. G., Cernusak, L. A., Eamus, D., Edwards, A. C., Evans, B. J., Fest, B., Goergen, K., Grover, S. P., Hacker, J., Haverd, V., Kanniah, K., Livesley, S. J., Lynch, A., Maier, S., Moore, C., Raupach, M., Russell-Smith, J., Scheiter, S., Tapper, N. J. and Uotila, P. Fire in Australian savannas: from leaf to landscape. Glob Change Biol, 21: 62–81. doi:10.1111/gcb.12686. 2015
23 Abramson, D., Krzhizhanovskaya, V., Lees, M. Perspectives of the International Conference of Computational Science 2014 Journal of Computational Science, Volume 10, September 2015, Pages 247-248, ISSN 1877-7503, http://dx.doi.org/10.1016/j.jocs.2015.08.007. 2015
24 Abramson, D. FlashLite: A High Performance Machine for Data Intensive Science 21st IEEE International Conference on Parallel and Distributed Systems (ICPADS 2015), Melbourne, Australia, December 14 – 17, 2015. 2015
25 Abramson, D., Dinh, N, Chao, J., DeRose, L., Gontarek, A., Vose, A. and., Moench, B. Relative debugging for a highly parallel hybrid computer system IEEE Supercomputing 2015, Austin Texas, 16th – 20th November, 2015 2015
26 Guru, S. M., Dwyer, R. G., Watts, M. E., Dinh, M. N., Abramson, D., Nguyen, H. A., Campbell, H. A., Franklin, C. E., Clancy, T. and Possingham H. P. A Reusable Scientific workflow for conservation Planning MODSIM 2015, 29th Nov – 4th Dec 2015, Gold Coast, Australia. 2015
27 Simonov, A., Grosse, W., Mashkina, M., Bethwaite, B., Tan, J., Abramson, D., Wallace, G., Moulton, S., Bond, A. New insights into the analysis of the electrode kinetics of flavin adenine dinucleotide redox centre of glucose oxidase immobilized on carbon electrodes Langmuir, Feb 2014. DOI: 10.1021/la404872p. 2014
28 Konagurthu, A. S., Allison, L., Abramson, D. , Stuckey, P. J. and Lesk, M. How precise are reported protein coordinate data? Acta Cryst. (2014). D70, 904-906, doi:10.1107/S1399004713031787. 2014
29 Dinh, M., Abramson, D., Chao, J. Statistical assertion: a more powerful method for debugging scientific applications Journal of Computational Science, Volume 5, issue 2, 126-134, March 2014. 2014
30 Vail, M., Tan, A., Murone, C., Abebe, D., Lee, F-T., Baer, M., Palath, V., Bebbington, C., Yarranton, G., Llerena, C., Garic, S., Abramson, D., Cartwright, G., Scott, A. and Lackmann, M. Targeting EphA3 inhibits cancer growth by disrupting the tumor stromal microenvironment Cancer Res. 2014 Aug 15;74(16):4470-81. doi: 10.1158/0008-5472.CAN-14-0218. 2014
31 Nguyen, H., Abramson, D. and  Kipouros, T. The WorkWays problem solving environment ICCS 2014, Cairns, June 10-12, 2014. 2014
32 Dinh, N, Abramson, D., Chao, J., Moench, B., Gontarek, A. and DeRose, L. Support comparative debugging for large-scale UPC programs ICCS 2014, Cairns, June 10-12, 2014. 2014
33 Dinh, M., Abramson, D., Chao, J. Scalable relative debugging IEEE Transactions on Parallel and Distributed Systems, Volume 25, issue 3, 740-74, March 2013. 2013
34 Płóciennik, M, Bartek, T., Owsiak, O., Altintas, I., Wang, J., Crawl, D., Abramson, D., Imbeaux, F., Guillerminet, B., Frauel, Y., Lopez-Caniego, M., Plasencia, I., Pych, W., Ciecielag, P., Approaches to Distributed Execution of Scientific Workflows in Kepler Fundamenta Informaticae, IOS Press, Volume 128, Number 3 / 2013, pp 281-302. 2013
35 Dinh, M., Abramson, D., Chao, J., Gontarek, A., Moench, B. and DeRose, L. A data-centric framework for debugging highly parallel applications Software: Practice and Experience, Nov 2013. 2013
36 Lo, Y.H., Peachey, T., Abramson, D., and Michailova, A. Sensitivity of rabbit ventricular action potential and Ca2+ dynamics to small variations in membrane currents and ion diffusion coefficients BioMed Research International, Volume 2013, Article ID 565431. 2013
37 Pettit, C.J., Williams, S., Bishop, I.D., Aurambout, J., Russel, A.B.M., Michael, A., Sharma, S., Hunter, D., Chan, P., Enticott, C.M., Borda, A., Abramson, D.A. Building an ecoinformatics platform to support climate change adaptation in Victoria Future Generation Computer Systems, vol 29, issue 2, Elsevier Science, Amsterdam Netherlands, pp. 624-640. 2013
38 Sher, A.A., Wang, K., Wathen, A., Maybank, P., Mirams, G., Abramson, D.A., Noble, D., Gavaghan, D.J. A local sensitivity analysis method for developing biological models with identifiable parameters: Application to cardiac ionic channel modeling Future Generation Computer Systems [P], vol 29, issue 2, Elsevier Science, Amsterdam Netherlands, pp. 591-598. 2013
39 Smanchat, S., Indrawan, M., Ling, S., Enticott, C. and Abramson, D. Scheduling Parameter Sweep Workflow in the Grid Based on Resource Competition Future Generation Computer Systems 29 (2013) 1164–1183 2013
40 Mashkina, E., Peachey, T., Lee, CY., Bond, A., Kennedy, G., Enticott, C., Abramson, D. and Elton, D. Estimation of electrode kinetic and uncompensated resistance parameters 3 and insights into their significance using Fourier transformed ac voltammetry and e-science software tools Journal of Electroanalytical Chemistry 690 (2013) 104–110. 2013
41 Huynh, M., Jin, C., Bethwaite, B., Abramson, D., Papadopoulos, P. and Clementi, L. Improved Virtual Machine Cloud Provisioning Cloud Asia, 2013, 14-17th May 2013, Singapore. 2013
42 Chao, J., Ding, L. and Abramson, D. Extending the Eclipse Parallel Tools Platform debugger with Scalable Parallel Debugging Library ICCS 2013, Barcelona, Spain, June 5 – 7, 2013. 2013
43 Dinh, M., Abramson, D., Chao, J., Kurniawan, D., Gontarek, A., Moench, B. and DeRose, L. Scalable parallel debugging with statistical assertions in 17th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (PPoPP) – Poster, New Orleans, LA, USA, pp. 311-312. 2012
44 Chao, J, Abramson, D., Dinh, M., Kurniawan, D., Gontarek, A, Moench, B. and DeRose, L. A Scalable Parallel Debugging Library with Pluggable Communication Protocols CCGrid 2012, The 12th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, May 13-16, 2012, Ottawa, Canada. 2012
45 Killeen, N., Lohrey, J., Farrell, M., Liu, W., Garic, S., Abramson, D. and Nguyen, H. Integration of modern data management practice with scientific workflows 8th IEEE International Conference on e-Science, October 8-12, 2012, Chicago, IL, USA. 2012
46 Nguyen, H and Abramson, D. WorkWays: Interactive Workflow-based Science Gateways 8th IEEE International Conference on e-Science, October 8-12, 2012, Chicago, IL, USA. 2012
47 Chambers, J., Bethwaite, B., Diamond, N., Peachey, T., Abramson, D., Petrou, S. and Thomas, E. Parametric computation predicts a multiplicative interaction between synaptic strength parameters that controls properties of gamma oscillations Frontiers in Computational Neuroscience, Volume 6, Article 53, doi: 10.3389/fncom.2012.00053, July 2012. 2012
48 Yu, H.L. , Tan, J. and Abramson, D. Solving Optimization Problems in Nimrod/OK using a Genetic Algorithm ICCS 2012, Omaha, Nebraska, June 3-6. 2012
49 Dinh, M., Abramson, D., Chao, J., Kurniawan, D., Gontarek, D., Moench, B. and DeRose, L. Debugging Scientific Applications With Statistical Assertions in International Conference on Computational Science (ICCS), Omaha, Nebraska, USA. 2012
50 Kipouros, T., Peachey, T., Abramson, D and Savill, M. Enhancing and Developing the Practical Optimisation Capabilities and Intelligence of Automatic Design Software 8th AIAA Multidisciplinary Design Optimization Specialist Conference, 23 – 26 April, Honolulu, Hawaii, AIAA-2012-1677. 2012
51 Peachey, T.C., Riley, M. J. W., Abramson, D. and Stewart, J. A Simplex-like Search Method for Bi-objective Optimization EngOpt 2012 – International Conference on Engineering Optimization, Rio de Janeiro, Brazil, 1-5 July 2012. 2012
52 Peachey, T.C., Diamond, N.T., Abramson, D. and Enticott, C.M. Computing Factorial Designs for Large Numbers of Factors with 2^m levels. 2012
53 Peachey, T.C., Abramson, D., Lewis, A. Heuristics for Parallel Simulated Annealing by Speculation. 2012
54 S. Smanchat, M. Indrawan, S. Ling, C. Enticott, D. Abramson, A Scheduler based on Resource Competition for Parameter Sweep Workflow, Proceedings of the International Conference on Computational Science, ICCS, 1-3 June 2011, pp. 176-185. 2011
55 Dinh, M., Abramson, D., Kurniawan, D., Moench, B. and DeRose, L. Assertion based parallel debugging CCGrid, 2011, Newport Beach, CA, 24-26th May, 2011. 2011
56 Abramson, D. A. Applications Development for the Computational Grid D.Sc. Thesis, Faculty of Science, Monash University. 2011
57 Peachey, T., Mashkina, E., Lee, C., Enticott, C., Abramson, D., Bond, A., Elton, D., Gavaghan, D., Stevenson, G., Kennedy, G. Leveraging e-Science Infrastructure for Electrochemistry Research Phil. Trans. R. Soc. A, AHM 2011, 10.1098/rsta.2011.0146, Phil. Trans. R. Soc. A, 28 August 2011 vol. 369 no. 1949 pp 3336-3352. 2011
58 Spencer, D., Zimmerman, A. and Abramson, D. Project Management in E-Science: Challenges and Opportunities Computer Supported Cooperative Work (CSCW), DOI: 10.1007/s10606-011-9140-4, June 2011, Springer 2011
59 Spencer, D., Zimmerman, A. and Abramson, D. Project Management in E-Science: Challenges and Opportunities Computer Supported Cooperative Work (CSCW), DOI: 10.1007/s10606-011-9140-4, June 2011, Springer 2011
60 Kurniawan, D. and Abramson, D. ISENGARD: an Infrastructure for Supporting e-Science and Grid Application Development Concurrency and Computation Practice and Experience, Volume 23, Issue 4, pp 390–414, 25 March 2011. 2011
61 Abramson, D., Bethwaite, B., Enticott, C., Garic, S. and Peachey, T. Parameter Exploration in Science and Engineering using Many-Task Computing Special issue of IEEE Transactions on Parallel and Distributed Systems on Many-Task Computing, June 2011, Volume: 22 Issue: 6, 960 – 973. 2011
62 Nguyen, H and Abramson, D. Bethwaite, B., Dinh, M., Enticott, C., Firth, S., Garic, S., Harper, I., Lackmann, M., Russel, A.B.M, Schek, S. and Vail, M. Integrating Scientific Workflows and Large Tiled Display Walls: Bridging the Visualization Divide Fourth International Workshop on Parallel Programming Models and Systems Software for High-End Computing (P2S2), co-located with 2011 International Conference on Parallel Processing (ICPP-2011), Taipei, Taiwan September 13-16, 2011. 2011
63 Abramson, D., Arzberger, P., Wienhausen, G., Date, S., Lin, F-P., Nan, K. and Shimojo, S. Cyberinfrastructure Internship and its application to e-Science e-Science 2011, Stockholm, Dec 2011. 2011
64 Arzberger, P., Wienhausen, G., Abramson, D., Date, S., Lin, F-P., Nan, K. and Shimojo, S. PRIME: an integrated and sustainable undergraduate international research program Advances in Engineering Education, American Society for Engineering Education, Summer 2010, Volume 2, Number 2. 2010
65 Riley, M. J. W., Peachey, T., Abramson D., and Jenkins, K. W. Multi-objective engineering shape optimization using differential evolution interfaced to the Nimrod/O tool IOP Conference Series: Materials Science and Engineering, Volume 10, Article Number 012189. 2010
66 Bethwaite, B., Abramson, D., Bohnert, F., Garic, S., Enticott, C., Peachey, T. Mixing the Grid and Clouds: High-throughput Science using the Nimrod Tool Family 2010
67 Tan, J., Abramson, D. and Enticott, C. Firewall Traversal in the Grid Architecture 12th IEEE International Conference on High Performance Computing and Communications (HPCC-2010), Melbourne, Australia, September 1-3, 2010. 2010
68 Pettit, C., Russel, A.B.M., Michael, A., Aurambout, J-P., Sharma, S., Williams S., Hunter, D Chan, P.C., Borda, A., Bishop, I., Abramson, D. Realising an eScience platform to support climate change adaptation in Victoria, IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010
69 Nunez, S., Bethwaite, B., Brenes, J., Barrantesz, G., Castro, J., Malavassiz, E. and Abramson, D. NG-TEPHRA: A Massively Parallel, Nimrod/G-enabled Volcanic Simulation in the Grid and the Cloud IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010
70 Sher, A., Wang, K., Wathen, A., Abramson, D. and Gavaghan., D. A Local Sensitivity Analysis Method for Developing Cardiac Models with Identifiable Parameters: Application to L-type Calcium Channels Regulation IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010
71 Enticott, C., Peachey, T., Abramson, D., Gavaghan, D., Bond, A., Elton, D., Mashkina, E., Lee, C., Kennedy, G. Electrochemical Parameter Optimization using Scientific Workflows IEEE e-Science 2010, December 6th – 9th, Brisbane, 2010. 2010
72 Sher, A., Cooling, M., Bethwaite, B., Tan, J., Peachey, T., Enticott, C., Garic, S., Gavaghan, D., Noble, D., Abramson, A., and Crampin, E. A Global Sensitivity Tool For Cardiac Cell Model: Ionic Currents Balance and Hypertrophic IP3 Transients in Atrial and Ventricular Cell Models 32nd Annual International IEEE EMBS Conference of the IEEE Engineering in Medicine and Biology Society in Buenos Aires Sheraton Hotel, Buenos Aires, Argentina during August 31 – September 4, 2010. 2010
73 Abramson, D., Dinh, M.N., Kurniawan, D., Moench, B. and DeRose, L. Data Centric HIghly Parallel Debugging 2010 International Symposium on High Performance Distributed Computing (HPDC 2010), Chicago, USA, June 2010 2010
74 Russel, A.B.M., Abramson, D., Bethwaite, B., Dinh, M., Enticott, C., Firth, S., Garic, S., Harper, I., Lackmann, M., Schek, S. and Vail, M. An Abstract Virtual Instrument System for High Throughput Automatic Microscopy Procedia Computer Science, Volume 1, Issue 1, ICCS (International Conference on Computational Science) 2010, May 2010, Pages 545-554, ISSN 1877-0509, DOI: 10.1016/j.procs.2010.04.058. 2010
75 Abramson,D., Bethwaite, B., Enticott, C., Garic,S., Peachey, T., Michailova,A., Amirriazi, S. Embedding optimization in computational science workflows Elsevier, Journal of Computational Science 1, 2010, pp 41-47 2010
76 Schmidberger, J., Bate, M., Reboul, C., Androulakis, S., Phan, J., Whisstock, J., Goscinski, W., Abramson, D. and Buckle, A. MrGrid: A Portable Grid Based Molecular Replacement Pipeline PLoS ONE, April 2010, Volume 5, Issue 4. 2010
77 Abramson, D., Bernabeu, M., Bethwaite, B., Burrage, K., Corrias, A., Enticott, C., Garic, S., Gavaghan, D., Peachey, T., Pitt-Francis, J., Pueyo, E., Rodriguez, B., Sher, A. and Tan, J. High Throughput Cardiac Science on the Grid Special issue of Transactions of the Royal Society. Phil. Trans. R. Soc. A 2010 368, 3907-3923. 2010
78 Peachey, T. C., Abramson D., and Lewis A. Parallel line search Optimization: Structure and Applications, Springer Optimization and Its Applications , Vol. 32, Pearce, C.; Hunt, E.(Eds.), Chapter 20, pp 369 – 381, ISBN: 978-0-387-98095-9 2009
79 Bernabeu, M. O., Corrias, A, Pitt-Francis, J, Rodriguez, B, Bethwaite, B, Enticott, C, Garic, S, Peachey, T, Tan, J, Abramson, D, and Gavaghan, D B. Grid computing simulations of ion channel block effects on the ECG using 3D anatomically-based models Computers and Cardiology, Park City, Utah, September 13-16, 2009. 2009
80 Tan, J. and Abramson, D. Optimizing Tunneled Grid Connectivity across Firewalls . 7th Australasian Symposium on Grid Computing and e-Research (AUSGRID 2009), Vol. 99. W. Kelly and P. Roe, Eds, Wellington, NZ, Jan 20th – 23rd, 2009. 2009
81 Schmidberger, J., Bethwaite, B., Enticott, C., Bate, M., Androulakis, S., Faux, N., Reboul, C., Phan, J., Whisstock, J., Garic, S., Goscinski, W., Abramson, D., and Buckle, A. High-throughput Protein Structure Determination Using Grid Computing IEEE Workshop on High Performance Computational Biology , May 25, 2009, Rome, Italy, co-located with IPDPS 2009. 2009
82 Chan, P and Abramson, D. Persistence and Communication State Transfer in an Asynchronous Pipe Mechanism International Journal of Grid and High Performance Computing, Vol. 1, Issue 3, 2009, Pages: 18-36. 2009
83 Abramson, D, Bethwaite, B, Dinh, M, Enticott, C, Firth, S, Garic, S, Harper, I, Lackmann, M, Nguyen, H, Ramdas, T, Russel, A.B.M, Schek, S and Vail, M. Virtual Microscopy and Analysis using Scientific Workflows IEEE e-Science 2009, Dec 9 – 11th, Oxford, UK. 2009
84 Abramson, D., Bethwaite, B., Enticott, C., Garic, S., Peachey, T., Michailova, A., Amirriazi, S., Chitters, R. Robust Workflows for Science and Engineering . 2nd Workshop on Many-Task Computing on Grids and Supercomputers(MTAGS 2009), Portland, USA, 16 November 2009 2009
85 Abramson D., Bethwaite B., Enticott C., Garic S., Peachey T. Parameter Space Exploration using Scientific Workflows ICCS 2009, Baton Rouge, Louisiana, May 2009 2009
86 Tan, J., Abramson, D. and Enticott, C. A Virtual Connectivity Layer for Grids IEEE e-Science 2009, Dec 9 – 11th, Oxford, UK. 2009
87 Smanchat, S., Indrawan, M., Ling S., Enticott, C. and Abramson, D. Scheduling Multiple Parameter Sweep Workflow Instances on the Grid IEEE e-Science 2009, Dec 9 – 11th, Oxford, UK. 2009
88 Pettit, C.J., Bishop, I.D., Borda, A., Uotila, P., Sposito, V.J., Raybould, L. and Russel, A.B.M. An e-Science Approach to Climate Change Adaptation Spatial Sciences Institute Biennial International Conference (SSC 2009): Place & Purpose Symposia, Adelaide, South Australia, 2009. 2009
89 Abramson, D.A.,Chu, C.,Kurniawan, D., Searle, A. Relative Debugging in an integrated development environment Software – Practice and Experience, 2009:pp 1157-1183; John Wiley&Sons Ltd. 2009
90 Ramdas, T., Egan, G. K., Abramson, D. A., & Baldridge, K. K. ÄòERI Sorting for Emerging Processor Architectures Computer Physics Communications, Elsevier, 2009 2009
91 Ho, T and Abramson, T. An Active Data Model High Performance & Large Scale Computing, W. Gentzsch, L. Grandinetti, G. Joubert (Editors), IOS Press, Amsterdam, The Netherlands, Advances in Parallel Computing, 2009. 2009
92 Dimmock M. R., J. E. Gillam, T. E. Beveridge, J.M.C. Brown, R. A. Lewis and C.J. Hall The Nimrod/G Grid Resource Broker for Economic-based Scheduling in Market-Oriented Grid and Utility Computing (Wiley Series on Parallel and Distributed Computing), Editors Rajkumar Buyya and Kris Bubendorfer, ISBN-13: 978-0470287682, November 2009. 2009
94 Goscinski, W. and Abramson, D. An Infrastructure for the Deployment of e-Science Applications in 2008
95 Chan, P. and Abramson, D. A Programming Framework for Incremental Data Distribution in Iterative Applications. In: Proc. of the 2008 IEEE International Symposium on Parallel and Distributed Processing with Applications (ISPA-2008). 10-12 December 2008. Sydney, Australia. pp 244 – 251, IEEE Press ISBN 978-0-7695-3471-8. 2008
96 Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. On ERI Sorting for SIMD Execution of Large-Scale Hartree-Fock SCF Comp. Phys. Commun., doi:10.1016/j.cpc.2008.01.045, 2008. 2008
97 Abramson, D. A., Enticott, C., Peachey,T. [4] exposes a variety of middleware layers, from Globus through to ad-hoc interfaces like SSH. Other engines, like Triana and Taverna allow users to invoke services as Web Services, but provide no explicit support for Grid middleware. In spite of its significant power, Kepler, and many other current workflow systems, do not support dynamic parallel execution of the workflow and its components. This means that users must explicitly code a workflow to cause it to execute elements in parallel. This significantly complicates the workflow and obscures the underlying business logic. ” position=”top” background=”#FFFFFF” color=”#000000″ font_size=”12″ text_align=”left” max_width=”500″ radius=”5″ shadow=”yes” behavior=”hover” class=””] Parameter Estimation using Scientific workflows Poster for Fourth IEEE International Conference on eScience, Indianopolis, 7-12 December 2008 2008
98 Ayyub, S., Abramson, D., Enticott, C., Garic, S., Tan, J. Fault-tolerant execution of large parameter sweep applications across multiple VOs with storage constraints Concurrency and Computation: Practice and Experience. Currently Online, 25/8/2008, 2008
99 Kurniawan, D and Abramson, D. An IDE Framework for Grid Application Development Grid 2008, Sept 29th – Oct 1st, Tsukuba, Japan. 2008
100 Bethwaite, B., Abramson, D., Buckle, A Grid Interoperability: An Experiment in Bridging Grid Islands PRAGMA Workshop at e-Science, 2008, 4th IEEE International Conference on e-Science, Indiana, Dec 8th – 12th, 2008 2008
101 Sher, A., Abramson, D, Enticott, C, Garic, S, Gavaghan, D., Noble, D., Noble, P., Peachey, T. Incorporating local Ca2+ dynamics into single cell ventricular models using Nimrod/O ICCS 2008, Krakow, Poland, June 2008. 2008
102 Amirriazi S., Chang S., Peachey T., Abramson D. and Michailova A. Biophysics 2008, Long Beach, California, February 2008. 2008
103 Pettit, C.J. and Russel, A.B.M. A Spatial Decision Support System Framework For Climate Change Adaptation In Victoria XXI Congress of the International Society for Photogrammetry and Remote Sensing (ISPRS), Beijing, China, July 2008, pp 515-521. 2008
104 Tan, J., Abramson, D. & Enticott,C. REMUS: A Rerouting and Multiplexing System for Grid Connectivity Across Firewalls Journal of Grid Computing, Springer Netherlands ISSN 1570-7873 (Print) 1572-9814 (Online),DOI 10.1007/s10723-008-9104-1, 28 June 2008 2008
105 Abramson D, Enticott C, Altintas I. Nimrod/K: Towards Massively Parallel Dynamic Grid Workflows IEEE SuperComputing 2008, Austin, Texas November 2008 2008
106 Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. Uniting extrinsic vectorization and shell structure for efficient SIMD evaluation of Electron Repulsion Integrals to appear, J. Chem. Phys. Vol 349/1-3 pp 147-157, doi:10.1016/j.chemphys.2008.02.038 2008
107 Goscinski, W. and Abramson, D. Parallel Programming on a High Performance Application-runtime Concurrency and Computation: Practice and Experience. June 2008. doi:10.1002/cpe.1325 2008
108 Ramdas, T., Egan, G. K., Abramson, D., & Baldridge, K. K. Run-time thread sorting to expose data-level parallelism In Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors. (pp. 55-60). 2008
109 Peachey, T. C., Diamond, N. T., Abramson, D. A. Sudholt, W., Michailova, A. Amirriazi, S. Fractional Factorial Design for Parameter Sweep Experiments using Nimrod/E Journal of Scientific Programming, Volume 16, Numbers 2,3, 2008. 2008
110 Ayyub, S., Abramson, D. A. Grid services and GriddLeS [2] web services. ” position=”top” background=”#FFFFFF” color=”#000000″ font_size=”12″ text_align=”left” max_width=”500″ radius=”5″ shadow=”yes” behavior=”hover” class=””] GridRod – A dynamic runtime scheduler for grid workflows Proceedings of the 2007 International Conference on Supercomputing, 17 June 2007 to 21 June 2007, The Association for Computing Machinery, New York NY USA, pp. 43-52. 2007
111 Faux N., Beitz A., Bate M., Amin A. A., Atkinson I., Enticott C., Mahmood K., Swift M., Treloar A., Abramson D., Whisstock J. C., and Buckle A. M. eResearch Solutions for High Throughput Structural Biology The 3rd IEEE International Conference on e-Science and Grid Computing, Bangalore, India, 10-13 December 2007, CS Press, pp 221-227. 2007
112 Kurniawan, D., Abramson, D. A. An integrated grid development environment in Eclipse Proceedings of the Third IEEE International Conference on e-Science and Grid Computing, 10 December 2007 to 13 December 2007, IEEE Computer Society, Los Alamitos CA USA, pp. 491-498 2007
113 Lynch, A. H., D. Abramson, K. J. Beringer, and P. Uotila Influence of savanna fire on Australian monsoon season precipitation and circulation as simulated using a distributed computing environment Geophys. Res. Lett., 34, L20801, doi:10.1029/2007GL030879. 2007
114 Ho, T. and Abramson, D., Active Data: Supporting the Grid Data Life Cycle 2007
115 Chan, P. and Abramson, D. Persistence and Communication State Transfer in an Asynchronous Pipe Mechanism The 13th International Conference on Parallel and Distributed Systems (ICPADS 07), Hsinchu, Taiwan, December 5-7, 2007. 2007
116 Chan, P. and Abramson, D. pi-spaces: Support for Decoupled Communication in Wide-Area Parallel Applications 6th International Conference on Grid and Cooperative Computing (GCC2007), Urumchi, Xinjiang, China, August 16-18, 2007 2007
117 Chan, P. and Abramson, D. A Scalable and Efficient Prefix-Based Lookup Mechanism for Large-Scale Grids The 3rd IEEE International Conference on e-Science and Grid Computing, Bangalore, India, 10-13 December 2007 2007
118 Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. Converting massive TLP to DLP: a special-purpose processor for molecular orbital computations ACM International Conference on Computing Frontiers 2007, pp. 267-276, Ischia Italy, May 7 – 9 2007 2007
119 Ayyub, S., Abramson, D., Enticott, C., Garic, S., Tan, J. Executing Large Parameter Sweep Applications on a Multi-VO Testbed 7th IEEE International Symposium on Cluster Computing and the Grid, CCGrid 2007, Los Alamitos CA USA, pp 73 – 80 2007
120 Zheng C, Katz M, Papadopoulos P, Abramson D, Ayyub S, Enticott C, Garic S, Goscinski W, Arzberger P, Lee B S, Phatanapherom S, Sriprayoonsakul S, Uthayopas P, Tanaka Y, Tanimura Y, Tatebe O. Lessons Learned Through Driving Science Applications in the PRAGMA Grid. Int. J. Web and Grid Services, Vol.3, No.3, pp 287- 312. 2007 2007
121 Kurniawan, D. and Abramson, D. A WSRF-Compliant Debugger for Grid Applications 21st IEEE International Parallel & Distributed Processing Symposium (IPDPS 2007) March 26-30, 2007, Long Beach, California USA 2007
122 Ramdas, T., Abramson, D., Egan, G. & Baldridge, K. Towards a special-purpose massively parallel computer for ab initio quantum chemistry: What’s on the table, and how do we take it? Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta), doi:10.1007/s00214-007-0306-6, Springer Berlin / Heidelberg, 1432-881X (Print) 1432-2234 (Online), April 28, 2007 2007
123 Abramson, D. Applications Development for the Computational Grid The Eighth Asia Pacific Web Conference, Harbin, China, Invited Key Note Address, 16th – 18th Jan, 2006. Lecture Notes in Computer Science, Volume 3841 / 2006, pp. 1 – 12, ISSN: 0302-9743 2006
124 Russel, A.B.M. and Khan, A.I. (2006). Towards Dynamic Data Grid Framework for eResearch . In Proc. Fourth Australasian Symposium on Grid Computing and e-Research (AusGrid 2006), Hobart, Australia. CRPIT, 54. Buyya, R. and Ma, T., Eds. ACS. 9-16. 2006
125 Ho, T. and Abramson, D. A Unified Data Grid Replication Framework 2nd IEEE International Conference on e-Science and Grid Computing. Dec. 4- 6, 2006, Amsterdam, Netherlands 2006
126 Kommineni, J., Abramson, D. and Tan, J. Communication over a Secured Heterogeneous Grid with the GriddLeS runtime environment 2nd IEEE International Conference on e-Science and Grid Computing. Dec. 4- 6, 2006, Amsterdam, Netherlands. 2006
127 Goscinski, W. and Abramson, D. Motor: A Virtual Machine for High Performance Computing IEEE HPDC 06, Paris 2006 2006
128 Pillai, B., Premaratne, M., Abramson, D., Lee, K., Nirmalathas, A., Lim, C., Shinada, S., Wada, N., and Miyazaki, T. Analytical Characterization of Optical Pulse Propagation in Polarization-Sensitive Semiconductor Optical Amplifiers IEEE Journal of Quantum Electronics, Vol. 42, No. 10, October 2006. 2006
129 Lee, B., Tang, M., Zhang, J., Soon, O. Y., Zheng, C., Arzberger, P., Abramson, D. Analysis of Jobs in a Multi-Organizational Grid Test-bed 6th IEEE International Symposium on Cluster Computing and the Grid 16-19 May 2006, Singapore 2006
130 Zheng, C., Abramson, D., Arzberger, P., Ayyub, S., Enticott, C., Garic, S., Katz, M., Kwak, J., Lee, B. S., Papadopoulos, P., Phatanapherom, S., Sriprayoonsakul, S., Tanaka, Y., Tanimura, Y., Tatebe, O., Uthayopas, P. The PRAGMA Testbed: Building a Multi-Application International Grid Workshop on Grid Testbeds, 6th IEEE International Symposium on Cluster Computing and the Grid 16-19 May 2006, Singapore 2006
131 Peachey, T. C. and Enticott, C. M. Determination of the Best Constant in an Inequality of Hardy, Littlewood and Polya Experimental Mathematics, v 15(1), pp 43-50, 2006. 2006
132 Baldridge, K. K., Sudholt, W., Greenberg, J., Amoreira, C., Potier, Y., Altintas, I., Birnbaum, A., Abramson, D. A., Enticott, C. M., Garic, S. Cluster and grid infrastructure for computational chemistry and biochemistry in Parallel Computing for Bioinformatics and Computational Biology, eds Albert Y. Zomaya, John Wiley & Sons, NJ USA and Canada, pp. 531-550. 2006
133 Pillai, B., Premaratne, M., Abramson, D., Nirmalathas, A. and Lim, C. Pulse Propagation in Polarization-sensitive Semiconductor Optical Amplifiers Joint International Conferences on Optical Internet and Next Generation Network (COIN-NGNCON 2006), which Korea, July 9 – 13, 2006. 2006
134 Abramson, D. A., Amoreira, C., Baldridge, K. K., Berstis, L., Kondrick, C., Peachey, T. C. A flexible grid framework for automatic protein-ligand docking Proceedings of the Second IEEE International Conference on e-Science and Grid Computing, Dec. 4- 6, 2006, IEEE Computer Society, Los Alamitos USA, pp. 1-8 2005
135 Lewis, A. Abramson, D. and Peachey, T. RSCS: A Parallel Simplex Algorithm for the Nimrod/O Optimization Toolset Scientific Programming, 14(1), 1-11 (2006). IOS Press. 2005
136 Sudholt, W., Baldridge, K., Abramson, D., Enticott, C. and Garic, S. Application of grid computing to parameter sweeps and optimizations in molecular modeling Future Generation Computer Systems, 21 (2005), 27-35. Also appeared in International Conference on Computational Sciences, ICCS04, Krakow Poland, June 6 – 9, 2004. 2005
137 Tan, J, Abramson, D. and Enticott, C. Bridging Organizational Network Boundaries on the Grid IEEE Grid 2005, Seattle, Nov 2005 2005
138 Chin P.W., Lewis D. G. and Giddy J. P. A Monte Carlo solution for external beam photon radiotherapy verification The Monte Carlo Method: Versatility Unbounded in a Dynamic Computing World, Chattanooga, Tennessee, April 2005 pp 17-21. 2005
139 Abramson D., Peachey T. and Lewis A. Model Optimization and Parameter Estimation with Nimrod/O The International Conference on Computational Science, May 28-31, 2006, University of Reading, UK 2005
140 Abramson, D., Kommineni, J. and Altinas, I. Flexible IO services in the Kepler Grid Workflow Tool IEEE Conference on e-Science and Grid Computing, Melbourne, Dec 2005. 2005
141 Chan, P. and Abramson, D. Netfiles: An Enhanced Stream-based Communication Mechanism International Symposium on High Performance Computing (ISHPC), Higashikasugano, Nara City, Japan, Sept 7th – 9th, 2005 2005
142 Abramson, D., Lynch, A., Takemiya, H., Tanimura, Y., Date, S., Nakamura, H., Jeong, K., Zhu, J., Lu, Z., Lee, H., Wang, C., Shih, H., Molina, T., Baldridge, K., Li, W. and Arzberger, P. Deploying Scientific Applications to the PRAGMA Grid Testbed: Strategies and Lessons 6th IEEE International Symposium on Cluster Computing and the Grid 16-19 May 2006, Singapore. 2005
143 Buyya, R., Murshed, M, Abramson, D. and Venugopal, S. Scheduling Parameter Sweep Applications on Global Grids: A Deadline and Budget Constrained Cost-Time Optimisation Algorithm International Journal of Software: Practice and Experience (SPE), Volume 35, Issue 5, pp 491 – 512, Wiley Press, New York, USA, April 25, 2005. 2005
144 Tran, N, Abramson, D., Mingins, C. Call-Ordering Constraints 12th ASIA-PACIFIC Software Engineering Conference (APSEC 2005), Taipei , Taiwan, December 15-17, 2005 2005
145 Buyya, R., Date, S., Mizuno-Matsumoto, Y., Venugopal, S. and Abramson, D. Neuroscience Instrumentation and Distributed Analysis of Brain Activity Data: A Case for eScience on Global Grids Journal of Concurrency and Computation: Practice and Experience (CCPE), Volume 17, No. 15, 1783-1798pp, Wiley Press, New York, USA, Dec. 2005. 2005
146 Buyya, R., Abramson, D. and Venugopal, S. The Grid Economy Special Issue on Grid Computing, Proceedings of the IEEE, Manish Parashar and Craig Lee (editors), Volume 93, Issue 3, 698-714pp, IEEE Press, New York, USA, March 2005 2004
147 Goscinski, W and Abramson, D. Legacy Application Deployment over Heterogeneous Grids using Distributed Ant IEEE Conference on e-Science and Grid Computing, Melbourne, Dec 2005 2004
148 Abramson, D. and Kommineni, J. A Flexible IO Scheme for Grid Workflows . IPDPS-04, Santa Fe, New Mexico, April 2004 2004
149 Sudholt, W., Baldridge, K., Abramson, D., Enticott, C. and Garic, S. Parameter Scan of an Effective Group Difference Pseudopotential Using Grid Computing New Generation Computing 22 (2004) 125-135 2004
150 Goscinski, W. and Abramson, D. Distributed Ant: A System to Support Application Deployment in the Grid IEEE Grid 2004, November, 2004, Pittsburgh, PA 2004
151 Ho, T. and Abramson, D. The GriddLeS Data Replication Service IEEE Conference on e-Science and Grid Computing, Melbourne, Dec 2005. 2004
152 Abramson, D., Dongarra, J., Meek, E., Roe, P and Shi, Z. Simplified Grid Computing through Spreadsheets and NetSolve Omiya Sonic City, Saitama, Tokyo, Japan, July 20-22, 2004, HPC Asia 2004 2004
153 Lewis, A., Abramson, D. and Peachey, T. RSCS: A Parallel Simplex Algorithm for the Nimrod/O Optimization Toolset International Symposium on Parallel and Distributed Computing, In association with HeteroPar’04, July 5th – 8th 2004, University College Cork, Ireland. 2004
154 Jones R., Peng D., Chaperon P., Tan M., Abramson D. and Peachey T. Structural Optimization with Damage Tolerance Constraints Theoretical and Applied Fracture Mechanics, 43, 2005, pp. 133-155. 2004
155 Russel, A.B.M. and Bevinakoppa, S. Predicting the Performance of Data Transfer in a Grid Environment In Chin-Sheng Chen, Joaquim Filipe, Isabel Seruca, José Cordeiro, editors, ICEIS 2005, Proceedings of the Seventh International Conference on Enterprise Information Systems, Miami, USA, May 25-28, 2005. pages 176-181, 2005. 2004
156 Kommineni, J and Abramson, D. Building Virtual Applications for the GRID with Legacy Components 2004
157 Beasley, J.E., Krishnamoorthy, M., Sharaiha, Y.M. and Abramson, D. Displacement problem and dynamically scheduling aircraft landings J. Opl Res.Soc. 55 (2004) 54-64. 2004
158 Nam, T., Abramson, D. and Mingins, C. A Taxonomy of Call Ordering Problems APSEC2004, Nov. 30 -Dec. 3, 2004, Busan, Korea 2004
159 Searle, A, Gough, J. K. and Abramson, D. A. DUCT: An Interactive Define-Use Chain Navigation Tool for Relative Debugging AADebug’03. Ghent, Belgium, September 2003 2003
160 Smith, K. A., Abramson, D. and Duke, D. Hopfield Neural Networks for Timetabling: Formulations, Methods, and Comparative Results Computers & Industrial Engineering, 44 (2003), pp 283 – 305 2003
161 Lewis, A., Abramson, D. and Peachey, T. An Evolutionary Programming Algorithm for Automatic Engineering Design, PPAM 2003, Fifth International Conference on Parallel Processing and Applied Mathematics, Czestochowa, Poland, Lecture Notes in Computer Science, Volume 3019 / 2004, pp. 586 – 594, ISBN: 3-540-21946-3, September 7-10, 2003 2003
162 Peachey, T., Abramson, D., Lewis, A., Kurniawan, D. and Jones, R. Optimization using Nimrod/O and its Application to Robust Mechanical Design PPAM 2003, Fifth International Conference on Parallel Processing and Applied Mathematics, Czestochowa, Poland, Lecture Notes in Computer Science, Volume 3019 / 2004, pp. 730 – 737, ISBN: 3-540-21946-3, September 7-10, 2003 2003
163 Abramson, D., Finkel, R., Kurniawan, D., Kowalenko, V. and Watson, G. Parallel Relative Debugging with Dynamic Data Structures 16th International Conference on Parallel and Distributed Computing Systems, pp 22 – 29, August 13 Р15, 2003 Reno, Nevada, USA 2003
164 Tran, N., Mingins, C., and Abramson, D. Managed Assertions for Component Contracts’, Proceedings of the Seventh World Conference on Integrated Design and Process Technology (IDPT-2003), 3-5 December 2003, Austin, Texas 2003
165 Tran, N., Mingins, C., and Abramson, D. Design and Implementation of Assertions for the Common Language Infrastructure IEE Proceedings – Software, 150(5), October 2003, pp. 329-336 2003
166 Lewis, A. and Abramson, D. An Evolutionary Programming Algorithm for Multi-Objective Optimisation Proc. 2003 Congress on Evolutionary Computation (CEC 2003), vol. 3, pp. 1926-1932, Canberra, Dec. 2003 2003
167 Abramson, D., Barak, A and Enticott, C. Job Management in Grids of MOSIX Clusters 16th International Conference on Parallel and Distributed Computing Systems, pp 36 – 42, August 13 Р15, 2003 Reno, Nevada, USA 2003
168 Buyya, R, Date, S., Mizuno-Matsumoto, Y., Venugopal, S and Abramson, D. Composition of Distributed Brain Activity Analysis and its On-Demand Deployment on Global Grids, New Frontiers in High-Performance Computing: Proceedings of the 10th International Conference on High Performance Computing (HiPC 2003) Workshops (Dec. 17, 2003, Hyderabad, India), ISBN: 81-88901-05-9, Elite Publishing House, New Delhi, India 2003
169 Buyya, R., Branson, K., Giddy, J. Abramson, D. The Virtual Laboratory: Enabling On Demand Drug Design with the Worldwide Grid Concurrency and Computation: Practice and Experience, 15(1), 2003 2003
170 Abramson, D and Watson, G. Debugging Scientific Applications in the .NET Framework Future Generation Computer Systems, Vol. 19 issue 5, June 2003., pp 665 – 678 2003
171 Abramson, D, Buyya, R. and Giddy, J. A Computational Economy for Grid Computing and its Implementation in the Nimrod-G Resource Broker Future Generation Computer Systems. Volume 18, Issue 8, Oct-2002. 2002
172 Abramson, D., Watson, G. and Dung, L. Guard: A Tool for Migrating Scientific Applications to the .NET Framework 2002 International Conference on Computational Science (ICCS 2002), Amsterdam, The Netherlands, April 21st 2002, pp 834 – 843 2002
173 Buyya, R, Abramson, D. Giddy, J and Stockinger, H. Economic Models for Resource Management and Scheduling in Grid Computing Journal of Concurrency: Practice and Experience, Grid computing special issue 14/13-15, 2002, pp 1507 – 1542 2002
174 Buyya, R, Murshed, M., and Abramson, D. A Deadline and Budget Constrained Cost-Time Optimization Algorithm for Scheduling Task Farming Applications on Global Grids The 2002 International Conference on Parallel and Distributed Processing Techniques and Applications, Las Vegas, Nevada, USA, June 2002 2002
175 Abramson, D., Roe, P., Kotler L and Mather, D. ActiveSheets: Super-Computing with Spreadsheets . 2001 High Performance Computing Symposium (HPC’01), Advanced Simulation Technologies Conference, April 22-26, 2001, pp 110 ‚Äì 115, Seattle, Washington (USA). 2001
176 Abramson, D, Lewis, A. and Peachy, T. Case Studies in Automatic Design Optimisation using the P-BFGS Algorithm 2001 High Performance Computing Symposium (HPC’01), Advanced Simulation Technologies Conference, April 22-26, 2001, pp 104 ‚Äì 109, Seattle, Washington (USA). 2001
177 Buyya, R, Abramson, D., and Giddy, J. A Case for Economy Grid Architecture for Service Oriented Grid Computing 10th Heterogeneous Computing Workshop April 23, 2001 in conjunction with IPDPS in San Francisco, California 2001
178 Buyya, R., Stockinger, H., Giddy, J. and Abramson, D. Economic Models for Management of Resources in Peer-to-Peer and Grid Computing Technical Track on Commercial Applications for High-Performance Computing, SPIE International Symposium on The Convergence of Information Technologies and Communications (ITCom 2001), August 20-24, 2001, Denver, Colorado, USA 2001
179 Randall, M. and Abramson, D. A General Meta-Heuristic Based Solver for Combinatorial Optimisation Problems Combinatorial Optimisation and Applications (COAP)., 20, 2001, pp 185 – 210. 2001
180 Chan, P. and Abramson, D. NetFiles: A Novel Approach to Parallel Programming of Master/Worker Applications HPC Asia 2001, 24-28 September 2001 • Royal Pines Resort Gold Coast, Queensland, Australia 2001
181 Watson, G., Abramson, D. Parallel Relative Debugging for Distributed Memory Applications: A Case Study International Conference on Parallel and Distributed Processing Techniques and Applications June 25-28, 2001, Las Vegas, Nevada, USA 2001
182 Abramson D, Lewis A, Peachey T, Fletcher, C. An Automatic Design Optimization Tool and its Application to Computational Fluid Dynamics SuperComputing 2001, Denver, Nov 2001. 2001
183 Abramson, D. Parallel Execution Mechanism for Spreadsheets Australian Provision Patent PQ8365/01. US Patent lodged (Number 20010056440). 2001
184 Abramson, D. Australian Provision Patent PR0553/01. 2001
185 Gedge, R. and Abramson, D. The Virtual Tea Room – experiences with a new type of social space to appear, 7th International Workshop on Groupware, 6-8 September 2001, Darmstadt, Germany 2001
186 Buyya, R., Giddy, J. and Abramson, D. An Evaluation of Economy-based Resource Trading and Scheduling on Computational Power Grids for Parameter Sweep Applications Workshop on Active Middleware Services (AMS 2000), (in conjuction with Ninth IEEE International Symposium on High Performance Distributed Computing), Kluwer Academic Press, August 1, 2000, Pittsburgh, USA 2000
187 Abramson, D., Kommineni, J., McGregor, J. and Katzfey, J. An Atmospheric Sciences Workflow and its Implementation with Web Services Future Generation Computer Systems, 21, 2005, pp 69 – 78. Also appeared in The International Conference on Computational Sciences, ICCS04, Krakow Poland, June 6 – 9, 2004. 2000
188 Lewis, A., Saario, S., Abramson, D. and Lu, J. An Application of Optimisation for Passive RF Component Design Conference on Electromagnetic Field Computation, Milwaukee, June 4-7th 2000 2000
189 De Silva, A. and Abramson, D. A. Parallel algorithms for solving Stochastic Linear Programs Chapter 38, pp 1097 -1115, Handbook of Parallel and Distributed Computing, McGraw Hill, Ed Albert Zomaya, ISBN 0-073020-2, 2000
190 Buyya, R, Abramson, D., and Giddy, J. An Economy Driven Resource Management Architecture for Global Computational Power Grids International Conference on Parallel and Distributed Processing Techniques and Applications (PDPTA), Las Vegas, Nevada, USA, June 26 – 29, 2000 2000
191 Buyya, R., Abramson, D. and Giddy, J. Nimrod/G: An Architecture of a Resource Management and Scheduling System in a Global Computational Grid HPC Asia 2000, May 14-17, 2000, pp 283 – 289, Beijing, China 2000
192 Abramson, D., Giddy, J. and Kotler, L. High Performance Parametric Modeling with Nimrod/G: Killer Application for the Global Grid? International Parallel and Distributed Processing Symposium (IPDPS), pp 520- 528, Cancun, Mexico, May 2000 2000
193 Abramson, D. Parametric Modelling: Killer Apps for Linux Clusters The Linux Journal, #73, May 2000, pp 84 – 91. 2000
194 Abramson, D and Giddy, J. Scheduling Large Parametric Modelling Experiments on a Distributed Meta-computer PCW ’97, September 25 and 26, 1997, Australian National University, Canberra, pp P2-H-1 ‚Äì P2-H-8 2000
195 Abramson, D, Lewis, A. and Peachy, T. Nimrod/O: A Tool for Automatic Design Optimization The 4th International Conference on Algorithms & Architectures for Parallel Processing (ICA3PP 2000), Hong Kong, 11 – 13 December 2000 2000
196 Watson, G. and Abramson, D. The Architecture of a Parallel Relative Debugger 13th International Conference on Parallel and Distributed Computing Systems – PDCS 2000, August 8 – 10, 2000 2000
197 Watson, G., Abramson, D. Relative Debugging for Data-Parallel Programs: A ZPL Case Study IEEE Concurrency, vol 8 issue 4, IEEE Computer Society, New York NY USA, pp. 42-52 2000
198 Beasley, J.E., Krishnamoorthy, M, Sharaiha, Y.M., Abramson, D.A. Scheduling Aircraft Landings – the Static Case Transportation Science, vol. 34, 2000, pp180-197. 2000
199 Abramson, D., Lowe, G. and Atkinson, P. Are you interested in Computers and Electronics Fourth Australasian Computing Education Conference, 4 – 6 December 2000 2000
200 Abramson, D., Power, K., and Sosic, R. Simulating Computer Networks using Clusters of PCs HPC-TelePar’99 at the 1999 Advanced Simulation Technologies Conference (ASTC’99), April 11-15, 1999, San Diego, California,USA 1999
201 Abramson, D. A. and Randall, M. A Simulated Annealing code for General Integer Linear Programs Annals of Operations Research 86(1999) 1999
202 Smith, K. A, Abramson, D. and Duke, D. Efficient Timetabling Formulations for Hopfield Neural Networks Artificial Neural Networks in Engineering Conference, 1999 (ANNIE’99). 1999
203 Randall, M. and Abramson, D. A General Parallel TABU Search Algorithm for Combinatorial Optimisation Problems Proceedings of 1999 Parallel and Real Time Conference (PART-99), December 1999, Melbourne, pp 68 – 79. 1999
204 Giles, S. and Abramson, D. The Virtual Tea Room: Integrating Video into Everyday Life International Wireless and Telecommunications Symposium, Malaysia, 17-21st May, 1999 1999
205 Abramson, D.A. , Dang, H. and Krisnamoorthy, M. Simulated Annealing Cooling Schedules for the School Timetabling Problem Asia-Pacific Journal of Operational Research, 16 (1999) 1-22. 1999
206 Giles, S. and Abramson, D. The Video Wall Project – Video Technology at the Leading Edge in Education Learning Technologies ’99, 20 – 23 October, 1999 Noosa, Queensland. 1999
207 Postula, A., Chen, S., Jozwiak, L and Abramson, D. Automated Synthesis of Interleaved Memory Systems for Custom Computing Machines Workshop on 1998
208 Abramson, D. Logothetis, P, Postula, A., Randall, M. FPGA Based Custom Computing Machines for Irregular Problems Fourth International Symposium on High-Performance Computer Architecture, (HPCA98), February 1-4, 1998, Las Vegas, Nevada 1998
209 Smith, K. A., Abramson, D. A., Duke, D. Hopfield Neural Networks for Timetabling: Formulations, Methods and Comparative Results in Business Systems Research Vol I, School of Business Systems, Clayton Vic Australia, pp. 196-224. 1998
210 De Silva, A. and Abramson, D. A. A Parallel Interior Point Method and its Application to Facility Location Problems Computational Optimization and Applications, Volume 9, Number 3, March 98, pp 249 – 273 1998
211 Postula, A., Abramson, D., Ziping Fang and Logothetis, P. A Comparison of High Level Synthesis and Register Transfer Level Design Techniques for Custom Computing Machines Configware Minitrack in the Software Technology Track of the Thirty-First Hawaii International Conference on System Sciences (HICSS-31), Hawaii, Jan 1998. 1998
212 Abramson, D, Logothetis, P., Randall, M and Postula, A. A Tail of 2n cities: Performing Combinatorial Optimisation using Linked Lists on Special Purpose Computers The International Conference on Computational Intelligence and Multimedia Applications – 1998 (ICCIMA’98), Gippsland, Victoria, Australia, 9-11 February 1998, pp 17 ‚Äì 26. 1998
213 Abramson, D., Smith, K., Logothetis, P. and Duke, D. FPGA Based Implementation of a Hopfield Neural Network for Solving Constraint Satisfaction Problems Workshop on Computational Intelligence of the 24th Euromicro Conference, Västerås, Sweden, August 25th-27th, 1998 1998
214 Abramson, D, Logothetis, P., Randall, M and Postula, A. Application Specific Computers for Combinatorial Optimisation The Australian Computer Architecture Workshop, Sydney, Feb 1997, Springer-Verlag Singapore Pty. Ltd., Singapore, pp 29 – 43. 1997
215 Sosic, R., Abramson, D. A. Guard: a relative debugger Software – Practice & Experience, vol 27, John Wiley & Sons, Ltd, California USA, pp. 185-206. 1997
216 Abramson, D and Watson, G. Relative Debugging for Parallel Systems PCW ’97, September 25 and 26, 1997, Australian National University, Canberra, pp P1-C-1 ‚Äì P1-C-8. 1997
217 D. Abramson, I. Foster, J. Giddy, A. Lewis, R. Sosic, R. Sutherst, N. White The Nimrod Computational Workbench: A Case Study in Desktop Metacomputing Australian Computer Science Conference (ACSC 97), Macquarie University, Sydney, Feb 1997, pp 17 – 26 1997
218 Lewis, A, Abramson, D and Simpson, R. Parallel non-linear optimization : Towards the design of a decision support system for air quality management IEEE Supercomputing 97, San Jose, 1997. 1997
219 Abramson D., Foster, I., Michalakes, J. and Sosic R. Relative Debugging: A new paradigm for debugging scientific applications the Communications of the Association for Computing Machinery (CACM), Vol 39, No 11, pp 67 – 77, Nov 1996 1996
220 Abramson, D., Dang, H. and Krishnamoorthy, M. A Comparison of Two Methods for Solving 0-1 Integer Programs Using a General Purpose Simulated Annealing Annals of Operations Research, 63 (1996), pp 129 – 150 1996
221 Abramson, D.A. and Sosic, R. A Debugging and Testing Tool for Supporting Software Evolution Journal of Automated Software Engineering, 3 (1996), pp 369 – 390 1996
222 Abramson, D.A., Sosic, R. and Watson, G. Implementation Techniques for a Parallel Relative Debugger International Conference on Parallel Architectures and Compilation Techniques – PACT ’96, October 20-23, 1996, Boston, Massachusetts, USA 1996
223 Postula, A., Abramson, D. and Logothetis, P. The Design of a Specialised Processor for the Simulation of Sintering Proceedings of the 22nd Euromicro Conference, September 2-5, 1996, Prague, Czech Republic. 1996
224 Postula, A., Abramson, D. and Logothetis, P. Synthesis for Prototyping of Application Specific Processors Invited Key Note Talk, 3rd Asia Pacific Conference on HDL (APCHDL-96), Jan 8-10, 1996, Bangalore, India. 1996
225 McKay, A. and Abramson, D. Evaluating the Performance of a SISAL implementation of the Abingdon Cross Image Processing Benchmark International Journal of Parallel Programming, Vol 33, Number 2, pp 105 – 134, 1995. 1995
226 Abramson, D.A. and Sosic, R. A Debugging Tool for Software Evolution CASE-95, 7th International Workshop on Computer-Aided Software Engineering, Toronto, Ontario, Canada, July 1995, pp 206 – 214. Also appeared in proceedings of 2nd Working Conference on Reverse Engineering, Toronto, Ontario, Canada, July 1995 1995
227 Lewis, A., Abramson D., Sosic R., Giddy J. Tool-based Parameterisation : An Application Perspective Computational Techniques and Applications Conference, Melbourne, July 1995 1995
228 Abramson, D., Cameron, G. DCompose: A Tool for Measuring Data Decomposition on Distributed Memory Multiprocessors Current and Future Trends in Parallel and Distributed Computing, Ed Albert Zomaya, Thomson Computer Press, Chapter 15, pp 411 – 433, ISBN 1-85032-188-4, 1995 1995
229 Abramson, D.A. and Sosic, R. Relative Debugging using Multiple Program Versions Key Note Address, 8th Int. Symp. on Languages for Intensional Programming , Sydney, 3-5th May, 1995. In Intensional Programming I, World Scientific, ISBN 981 – 02 – 2400 – 1. 1995
230 Abramson D., Sosic R., Giddy J. and Hall B. Nimrod: A Tool for Performing Parametised Simulations using Distributed Workstations The 4th IEEE Symposium on High Performance Distributed Computing, Virginia, August 1995, pp 112-121 1995
231 Abramson, D, de Silva, A, Randall, M and Postula, A. Special Purpose Computer Architectures for High Speed Optimisation Parallel and Real Time Computing conference (PART-95), pp 13 – 20, September, 1995, Perth 1995
232 Abramson D., Foster, I., Michalakes, J. and Sosic R. Relative Debugging and its Application to the Development of Large Numerical Models Proceedings of IEEE Supercomputing 1995, San Diego, December 95. Selected as best paper 1995
233 Wail, S. and Abramson, D.A. Can Data-flow Machines be programmed with an Imperative Language? Appearing in 1995
234 Abramson, D.A. , Dang, H. and Krisnamoorthy, M. Cooling Schedules for Simulated Annealing Based Scheduling Algorithms Proceeding of the 17th Australian Computer Science Conference, pp 541 – 550. Univ of Caterbury, Christchurch, NZ, Jan 1994 1994
235 Abramson, D., Mills, G. and Perkins, S. Parallelisation of a Genetic Algorithm for the Computation of Efficient Train Schedules Proceedings of 1993 Parallel Computing and Transputers Conference, Brisbane, pp 139 – 149 Nov 1993, IOS Press 1994
236 Abramson , D., Sosic , R., Giddy , J., Cope , M. The Laboratory Bench: Distributed Computing for Parametised Simulations 1994 Parallel Computing and Transputers Conference, Wollongong, Nov 94, pp 17 – 27. 1994
237 Abramson, D. Predicting the Performance of Scientific Applications on Distributed Memory Multiprocessors The IEEE 1994 Scalable High Performance Computing Conference. Knoxville Tennessee, pp 285 – 292, May 23-25 1994. 1994
238 Abramson, D. Method for Testing and Debugging Computer Programs Australian Provisional Patent, PM5196/94. US Patent Number 5,838,975. 1994
239 Abramson, D.A., Cope, M. and McKenzie, R. Modelling Photochemical Pollution using Parallel and Distributed Computing Platforms Proceedings of PARLE-94, pp 478 – 489, Athens, Greece, July 1994. 1994
240 Abela, J., Abramson, D., Krishnamoorthy, M. De Silva, A and Mills, G. Computing Optimal Schedules for Landing Aircraft The 12th National Conference of the Australian Society for Operations Research. Adelaide, July 7-9, 1993, pp 71 – 90 1993
241 Jones, D., Hulskamp, J. and Abramson, D. BABBAGE: A tool to facilitate the implementation of master-slave grid oriented applications on distributed computer systems Proceedings of 1993 Parallel Computing and Transputers Conference, Brisbane, pp 350 – 359, Nov 1993. 1993
242 Abramson, D., Dang, H. and Krishnamoorthy, M. Enhanced Simulated Annealing Through Linear Programming Preprocessing The 12th National Conference of the Australian Society for Operations Research. Adelaide, July 7-9, 1993, pp 91- 114. 1993
243 Rotstayn, L., Francis, R., Abramson, D. and Dix, M. Suitability of GCM physics for execution on SIMD parallel computers J. Meteor. Soc. Japan, Vol 71,1993 . pp 297-303. 1993
244 Abramson, D.A. and Rosenberg, J. Hardware Support for Program Debuggers in a Paged Virtual Memory Computer Architecture News, June 1983, Vol 11, No 2, pp 8-19. 1993
245 Abramson, D. A. High Performance Application Specific Architectures Proceedings of 26th Hawaii International Conference on System Sciences, Kauai, Hawaii, pp 92 – 95, Jan 1993 1993
246 De Silva, A. and Abramson, D. Computational Experience with the Parallel Progressive Hedging Algorithm for Stochastic Linear Programs Proceedings of 1993 Parallel Computing and Transputers Conference, pp 164 – 174, Brisbane, Nov 1993 1993
247 Abramson, D., Cameron, G., Dix, M. and Makies, M. STORM: A Bus Based Shared Memory Multiprocessor for Climate Modelling Proceedings of 26th Hawaii International Conference on System Sciences, Kauai, Hawaii, pp 96 – 105, Jan 1993. 1993
248 Jones, D., Hulskamp, J. and Abramson, D. Tools to facilitate the implementation of grid based finite difference algorithms on distributed computer systems Proceedings of World Transputer Conference, Aachen, 20-22 September, Germany, 1993 1993
249 Rosenberg, J. Keedy, J. L. and Abramson, D. Addressing Mechanisms for Large virtual Memories The Computer Journal, August 1992. 1992
250 Rawling, M., Francis, R. and Abramson, D. Performance Bounds for the Conservative Parallel Discrete Event Simulation of VLSI Circuits and Systems 15th Australian Computer Science Conference, Hobart, Jan 1992, pp 753 – 767. 1992
251 Abramson, D. A. and Abela, J. A Parallel Genetic Algorithm for Solving the School Timetabling Problem IJCAI workshop on Parallel Processing in AI, Sydney, August 91. Also appearing in 15 Australian Computer Science Conference, Hobart, Feb 1992, pp 1 – 11. 1992
252 Rawling, M., Francis, R. and Abramson, D. Potential Performance of Parallel Conservative Simulation of VLSI Circuits and Systems IEEE/ACM 25th Annual Simulation Symposium, pp 71 – 80. 1992. 1992
253 Abramson, D.A. A Very High Speed Architecture to Support Simulated Annealing IEEE Computer, May 1992, pp 27 – 34. 1992
254 Abramson, D.A. and Egan, G. Design Considerations for a High Performance Dataflow Multiprocessor Chapter 4, 1991
255 Abramson, D.A. and Freidin, J. A Parallel Router for Printed Circuit Boards 24th Hawaii International Conference on System Sciences, pp 164 – 171, Jan 1991. 1991
256 Abramson, D., Francis, R. and Dix, M. A Retargettable Programming Environment for Studying Climate Models, Computational Techniques and Applications (CTAC-91), pp 91 – 100, July 1991. 1991
257 Abramson, D.A., Dix, M., Whiting, P. A Study of the Shallow Water Equations on Various Parallel Architectures 14th Australian Computer Science Conference, pp 06-1 – 06-12, Sydney, 1991 1991
258 Francis, R., Abramson, D., Dix, M. and Rotstayn, L. SIMD Climate Modeling Parallel Computing 91, pp 471 – 482, London, September 1991. 1991
259 McKay, A and Abramson, D. Using SISAL to implement the Abingdon Cross Image Processing Benchmark 4th Australian SuperComputing Conference, Gold Coast, Dec 1991, pp 107 – 116. 1991
260 Abramson, D. A. Constructing School Timetables using Simulated Annealing: Sequential and Parallel Algorithms Management Science, Vol 37, No 1, Jan 1991, pp 98 – 113 1991
261 Jones, D, Abramson, D.A. and Hulskamp, J. Porting Parallel Programs from Shared Memory Multiprocessors to Transputer Based Message Passing Systems 1991 Australian Transputer and OCCAM users group, Canberra, September 1991. 1991
262 Abramson, D.A., et al, Super Computing Applications in the CSIRO-DIT High Performance Computation Project 3rd Australian Supercomputing Conference, Melbourne, Dec 1990 1990
263 Abramson, D and Egan, G, The RMIT Dataflow Computer: A Hybrid Architecture The Computer Journal, Vol 33, No 3, June 1990, pp 230 – 240. 1990
264 Abramson, D. An Apparatus for use in Producing a Timetable Australian Provisional Patent, PK0925/90. 1990
265 Abramson, D.A. Case Studies in Parallel Processing Proceedings of 1989 International Conference on Computation, Applications and Techniques (CTAC 89) Brisbane, 1989, Hemisphere Publishing. 1989
266 Abramson, D.A., Ramamohanarao, K., and Ross, M. A Scalable Cache Coherence Algorithm using a Selectively Clearable Cache Memory Australian Computer Journal, Vol 21, No 1, Feb 1989. 1989
267 Abramson, D. A. Using a dataflow computer for functional logic simulation Third International Conference on Supercomputing, Boston, Massachusetts, May 15-20, 1988. 1988
268 Abramson, D, and Egan, G. An Overview of the RMIT/CSIRO Parallel Systems Architecture Project Australian Computer Journal, Vol 20, No 3, August 1988. 1988
269 Abramson, D. and Rosenberg, J. The Micro-Architecture of a Capability Based Computer Proceedings of ACM 19th International Conference on Microprogramming, New York, 1986. 1986
270 Abramson, D. and Rosenberg, J. Tools for Microcode development in a Capability based computer Proceedings of ACM 19th International Conference on Microprogramming, New York, 1986. 1986
271 Yap, R., Rosenberg, J. and Abramson, D.A. A C compilerfor a Capability Based Computer Proceedings of the 9th Australian Computer Sciences Conference, Canberra Jan 1985, pp 23 – 34. 1985
272 Abramson, D.A. and Keedy, J.L. Implementing a Large Virtual Memory in a Distributed Computer System Proceedings of Eighteenth Annual Hawaii International Conference on System Sciences, January 2-4, 1985. 1985
273 Rosenberg J and Abramson D.A.. MONADS PC – A Capability-Based Workstation to Support Software Engineering Proceedings of Eighteenth Annual Hawaii International Conference on System Sciences, January 2-4, 1985. (Selected as Best paper in Hardware track) 1985
274 Rosenberg, J. and Abramson, D.A. The MONADS Architecture: Motivation and Implementation Proceedings of First Pan Pacific Computer Conference, Melbourne, 1985. Invited Paper. 1985
275 Abramson, D.A. and Rosenberg, J. Supporting a Capability-based Architecture in Silicon 4th Australian Micro-electronics conference, Sydney, May 1985, pp 43 – 50. 1985
276 Abramson, D.A. and Rosenberg, J. A Vertical User Interface to Horizontal Microcode via a Retargetable Microassembler Proceedings of 8th Australian Computer Science Conference, Feb 1985, Melbourne, Australia, pp 8-1 – 8-10. 1985
277 Abramson, D.A. A Microcode Emulator for Undergraduate Teaching Proc. 7th Australian Sciences Conference, Adelaide, Australia, Feb 1984, pp 3-1 – 3-10, . 1984
278 Abramson, D.A. The MONADS II Computer System, Proc. 6th Australian Sciences Conference, Sydney, Februrary 1983, pp 1 – 10. 1983
279 Abramson, D.A. Hardware for Capability Based Addressing Proc. 9th Australian Computer Conference, Hobart, pp 101-115, August, 1982. 1982
280 Keedy, J.L., Abramson D., Rosenberg, J. and Rowe, D.M. A Comparison of the MONADS II and III Computer Systems Proc. 9th Australian Computer Conference, Hobart, August 1982, pp 581 – 58 . 1982
281 Keedy, J.L., Abramson, D., Rosenberg, J. and Rowe, D.M. The MONADS Project Stage 2: Hardware Designed to Support Software Engineering Techniques Proc. 9th Australian Computer Conference, Hobart, August 1982, pp 575 – 580, . 1982
282 Abramson, D.A. A Technique for Enhancing Processor Architecture Proc. 5th Australian Computer Science Conference 1982
283 Abramson, D.A. Hardware Management of a Large Virtual Memory, Proc. 4th Australian Computer Science Conference Brisbane (Australian Computer Science Communications 3, 1, pp. 1-13). 1981

%d bloggers like this: